GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005309-TA|BGIBMGA005309-PA|undefined
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   1.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   3.4  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   3.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    24   7.8  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 2   QIRDYECSRGEIERRPSRNSDEKVRRGERVMQNLLVKESIIRQKI 46
           ++ D E    E+E  P+ + + ++ +  ++MQ L+V ES   Q I
Sbjct: 289 KLNDAENRIKELENNPTLSFNPELEKNLKLMQELIVAESSKTQHI 333


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 18   SRNSDEKVRRGERVMQNLLVKESII 42
            SRNS+EK RR   +M+    KE ++
Sbjct: 1069 SRNSEEKSRRDSSLMEMRTQKEMLV 1093


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 12 EIERRPSRNSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYVQNTQEWMK 71
          E+ER   R    K+ +    +     KE   + K+D KA   SPVA   +YV+ T    K
Sbjct: 29 ELERE--RQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKIASPVA---EYVEKTTPGEK 83

Query: 72 TI 73
           +
Sbjct: 84 KV 85


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 22  DEKVRRGERVMQNLLVKE------SIIRQKIDVKADATSPVASKFKYVQNTQE 68
           +E++R+G+ +MQ +  KE        + +  D   D    V++ F+ ++N +E
Sbjct: 525 NEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTNEQVSTAFEKIRNEEE 577


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,532
Number of Sequences: 5004
Number of extensions: 12376
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 2,362,478
effective HSP length: 65
effective length of query: 57
effective length of database: 2,037,218
effective search space: 116121426
effective search space used: 116121426
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 49 (23.8 bits)