GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005309-TA|BGIBMGA005309-PA|undefined
         (122 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   0.99 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   1.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   6.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   9.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 12  EIERRPSRNSDEKVRR 27
           EI RR  ++ D+K+RR
Sbjct: 230 EIRRRSKKSEDDKIRR 245


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCI 264


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCI 264


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCI 264


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCI 332


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 54  SPVASKFKYVQNTQEWMKT 72
           SP++S+  Y  NT+ +MK+
Sbjct: 269 SPLSSRSLYYVNTKPFMKS 287


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 5   DYECSRGEIERRPSRNSD 22
           DYE SRG I+ +   N +
Sbjct: 771 DYELSRGYIDEKILENQN 788


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCI 264


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCI 264


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 221 DSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCI 264


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 20  NSDEKVRRGERVMQNLLVKESIIRQKIDVKADATSPVASKFKYV 63
           +S EK+  G  ++ +L V  +++ + +   +DA   + S F  +
Sbjct: 289 DSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCI 332


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 54  SPVASKFKYVQNTQEWMKT 72
           SP+AS   Y  NT  +MK+
Sbjct: 266 SPLASHGLYYVNTAPFMKS 284


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 6   YECSRGEIERRPSRNSD 22
           +ECS+      P RNSD
Sbjct: 98  FECSKTSNPCLPHRNSD 114


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,343
Number of Sequences: 429
Number of extensions: 801
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 122
length of database: 140,377
effective HSP length: 51
effective length of query: 71
effective length of database: 118,498
effective search space:  8413358
effective search space used:  8413358
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)