GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005308-TA|BGIBMGA005308-
PA|IPR005062|SAC3/GANP/Nin1/mts3/eIF-3 p25
         (1554 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   1.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   2.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   6.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   8.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 400 SSVCEVIAGGHILKQDYKNHVLNTSFYSDGKLKESALIAEDQGYNTVNDS 449
           ++V E+I   H +  +  +++ NT+  +D   K +   A +Q  N  ND+
Sbjct: 403 ANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
            alpha 1 subunit protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 1357 NPVDVENMQYQI--RTYCKQIGWLENSEEIVCKVITVLPNELTDLNMSCENFKKYFMNYN 1414
            +P + +  +Y+I    Y + +   E  + +   +   L +E TDL M   +F K F  + 
Sbjct: 240  DPYNTKFFRYRITPELYSEHLVVPEIEDNLETSLFRPLSSEATDLRMGVASFCKAFPWHF 299

Query: 1415 LIDMLNVIVYEKINSLKNFGN 1435
            ++D    +V   +  ++ FG+
Sbjct: 300  VVDRQLELVQLGVGFMRIFGH 320


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 759 KNRAQTVADNILNSLSNVQKGEIYDFNQNDDEAKKL 794
           + R ++    I++SLSN     I ++N N++  KKL
Sbjct: 71  RERERSKERKIISSLSNNYISNISNYNNNNNYNKKL 106


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 617 TKPKTLPASDNIFAKAMTNKTKENIADSIFQNKNTSIGKDNIFTKNATHFTKFNENT 673
           TK  TL A  +I    + N   EN+  + FQ   T+     + T  A+  T+  E T
Sbjct: 179 TKISTLDAILDI----IRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEAT 231


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/73 (17%), Positives = 31/73 (42%)

Query: 584 NSNTSVFQKVNEKVDPSQNSRSLFSTTVNAEIKTKPKTLPASDNIFAKAMTNKTKENIAD 643
           ++  ++    N  +  ++  R++ +  +N   K+ P  +          ++ + K N  +
Sbjct: 423 HAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVE 482

Query: 644 SIFQNKNTSIGKD 656
           +    KNT I KD
Sbjct: 483 NACVLKNTEIFKD 495


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,671
Number of Sequences: 429
Number of extensions: 18571
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 7
length of query: 1554
length of database: 140,377
effective HSP length: 67
effective length of query: 1487
effective length of database: 111,634
effective search space: 165999758
effective search space used: 165999758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)