Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005307-TA|BGIBMGA005307-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(137 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104960-1|AAI04961.1| 1980|Homo sapiens minichromosome maintena... 38 0.009
BC104958-1|AAI04959.1| 1980|Homo sapiens minichromosome maintena... 38 0.009
AY590469-1|AAS89300.1| 1980|Homo sapiens MCM3 minichromosome mai... 38 0.009
AJ010089-1|CAB52687.1| 1980|Homo sapiens GANP protein protein. 38 0.009
AB011144-1|BAA25498.1| 1872|Homo sapiens KIAA0572 protein protein. 38 0.009
M96954-1|AAA36384.1| 375|Homo sapiens nucleolysin TIAR protein. 34 0.14
D64015-1|BAA21559.1| 265|Homo sapiens T-cluster binding protein... 34 0.14
BC030025-1|AAH30025.1| 252|Homo sapiens TIAL1 protein protein. 34 0.14
AY633610-1|AAV33303.1| 374|Homo sapiens aging-associated gene 7... 34 0.14
AC016700-3|AAX93193.1| 386|Homo sapiens unknown protein. 34 0.14
AB209260-1|BAD92497.1| 183|Homo sapiens TIA1 cytotoxic granule-... 34 0.14
AB209211-1|BAD92448.1| 464|Homo sapiens TIA1 protein variant pr... 34 0.14
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 33 0.44
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 33 0.44
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 33 0.44
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 33 0.44
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 33 0.44
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 33 0.44
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 33 0.44
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 33 0.44
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 33 0.44
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 33 0.44
AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine tract-bi... 33 0.44
M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternati... 32 0.58
M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human alternati... 32 0.58
M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein. 32 0.58
BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein. 32 0.58
BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor, argini... 32 0.58
AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor, argini... 32 0.58
AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein. 32 0.58
BC016582-1|AAH16582.1| 532|Homo sapiens polypyrimidine tract bi... 31 1.0
AL357150-5|CAH70269.1| 531|Homo sapiens polypyrimidine tract bi... 31 1.0
AL357150-4|CAH70267.1| 537|Homo sapiens polypyrimidine tract bi... 31 1.0
AL357150-3|CAH70266.1| 536|Homo sapiens polypyrimidine tract bi... 31 1.0
AL357150-2|CAH70268.1| 532|Homo sapiens polypyrimidine tract bi... 31 1.0
AF530581-1|AAM94625.1| 536|Homo sapiens non-neuronal splice var... 31 1.0
AF530580-1|AAM94624.1| 537|Homo sapiens non-neuronal splice var... 31 1.0
AF176085-1|AAF14284.1| 531|Homo sapiens neural polypyrimidine t... 31 1.0
AB051233-1|BAB71743.1| 356|Homo sapiens PTB-like protein S prot... 31 1.0
AB051232-1|BAB71742.1| 532|Homo sapiens PTB-like protein L prot... 31 1.0
BC111739-1|AAI11740.1| 558|Homo sapiens RBM26 protein protein. 31 1.8
BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein. 31 1.8
BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif prote... 31 1.8
AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif prote... 31 1.8
AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif prote... 31 1.8
AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif prote... 31 1.8
AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif prote... 31 1.8
AK027456-1|BAB55125.1| 680|Homo sapiens protein ( Homo sapiens ... 31 1.8
AK027339-1|BAB55046.1| 534|Homo sapiens protein ( Homo sapiens ... 31 1.8
X16135-1|CAA34261.1| 558|Homo sapiens protein ( Human mRNA for ... 29 4.1
BC069184-1|AAH69184.1| 558|Homo sapiens HNRPL protein protein. 29 4.1
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 29 4.1
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 29 4.1
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 29 4.1
AB044547-1|BAB18649.1| 589|Homo sapiens heterogeneous nuclear r... 29 4.1
BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein. 29 5.4
BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulat... 29 5.4
AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of diffe... 29 5.4
AL158824-9|CAI12353.1| 524|Homo sapiens ROD1 regulator of diffe... 29 5.4
AL158824-8|CAI12354.1| 457|Homo sapiens ROD1 regulator of diffe... 29 5.4
AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of diffe... 29 5.4
AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein. 29 5.4
U69546-1|AAB09040.1| 490|Homo sapiens RNA-binding protein BRUNO... 29 7.1
BC036391-1|AAH36391.1| 521|Homo sapiens CUGBP2 protein protein. 29 7.1
BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein. 29 7.1
BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein. 29 7.1
AL157704-2|CAH70231.1| 498|Homo sapiens CUG triplet repeat, RNA... 29 7.1
AL157704-1|CAH70230.1| 490|Homo sapiens CUG triplet repeat, RNA... 29 7.1
AL136320-2|CAI20168.1| 498|Homo sapiens CUG triplet repeat, RNA... 29 7.1
AL136320-1|CAI20169.1| 490|Homo sapiens CUG triplet repeat, RNA... 29 7.1
AF432906-1|AAL27627.1| 488|Homo sapiens neuroblastoma apoptosis... 29 7.1
AF295068-3|AAK72223.1| 484|Homo sapiens neuroplastoma apoptosis... 29 7.1
AF295068-2|AAK92699.1| 490|Homo sapiens neuroplastoma apoptosis... 29 7.1
AF295068-1|AAK72224.1| 509|Homo sapiens neuroplastoma apoptosis... 29 7.1
AF090694-1|AAD13761.1| 509|Homo sapiens apoptosis-related RNA b... 29 7.1
AF090693-1|AAD13760.1| 508|Homo sapiens apoptosis-related RNA b... 29 7.1
AF036956-1|AAD02074.1| 490|Homo sapiens neuroblastoma apoptosis... 29 7.1
AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein. 29 7.1
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein. 28 9.4
>BC104960-1|AAI04961.1| 1980|Homo sapiens minichromosome maintenance
complex component 3 associated protein protein.
Length = 1980
Score = 38.3 bits (85), Expect = 0.009
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 25 SSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
++I C N+PD L + + HF K +VQ+I K++ +V + + SA A
Sbjct: 435 TAIQCKNIPDYLNDRTILENHFGKIAKVQRIFTRRSKKLAVVHFFDHASAALA 487
>BC104958-1|AAI04959.1| 1980|Homo sapiens minichromosome maintenance
complex component 3 associated protein protein.
Length = 1980
Score = 38.3 bits (85), Expect = 0.009
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 25 SSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
++I C N+PD L + + HF K +VQ+I K++ +V + + SA A
Sbjct: 435 TAIQCKNIPDYLNDRTILENHFGKIAKVQRIFTRRSKKLAVVHFFDHASAALA 487
>AY590469-1|AAS89300.1| 1980|Homo sapiens MCM3 minichromosome
maintenance deficient 3 (S. cerevisiae) associated
protein protein.
Length = 1980
Score = 38.3 bits (85), Expect = 0.009
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 25 SSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
++I C N+PD L + + HF K +VQ+I K++ +V + + SA A
Sbjct: 435 TAIQCKNIPDYLNDRTILENHFGKIAKVQRIFTRRSKKLAVVHFFDHASAALA 487
>AJ010089-1|CAB52687.1| 1980|Homo sapiens GANP protein protein.
Length = 1980
Score = 38.3 bits (85), Expect = 0.009
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 25 SSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
++I C N+PD L + + HF K +VQ+I K++ +V + + SA A
Sbjct: 435 TAIQCKNIPDYLNDRTILENHFGKIAKVQRIFTRRSKKLAVVHFFDHASAALA 487
>AB011144-1|BAA25498.1| 1872|Homo sapiens KIAA0572 protein protein.
Length = 1872
Score = 38.3 bits (85), Expect = 0.009
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 25 SSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
++I C N+PD L + + HF K +VQ+I K++ +V + + SA A
Sbjct: 327 TAIQCKNIPDYLNDRTILENHFGKIAKVQRIFTRRSKKLAVVHFFDHASAALA 379
>M96954-1|AAA36384.1| 375|Homo sapiens nucleolysin TIAR protein.
Length = 375
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22 NPKS-SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
+PK+ ++ C + L + ++ FS FG++ +IR+FP+K V + SA A+++
Sbjct: 201 SPKNCTVYCGGIASGLTDQLM-RQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 259
>D64015-1|BAA21559.1| 265|Homo sapiens T-cluster binding protein
protein.
Length = 265
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22 NPKS-SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
+PK+ ++ C + L + ++ FS FG++ +IR+FP+K V + SA A+++
Sbjct: 162 SPKNCTVYCGGIASGLTDQLM-RQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 220
>BC030025-1|AAH30025.1| 252|Homo sapiens TIAL1 protein protein.
Length = 252
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22 NPKS-SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
+PK+ ++ C + L + ++ FS FG++ +IR+FP+K V + SA A+++
Sbjct: 78 SPKNCTVYCGGIASGLTDQLM-RQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 136
>AY633610-1|AAV33303.1| 374|Homo sapiens aging-associated gene 7
protein protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22 NPKS-SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
+PK+ ++ C + L + ++ FS FG++ +IR+FP+K V + SA A+++
Sbjct: 201 SPKNCTVYCGGIASGLTDQLM-RQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 259
>AC016700-3|AAX93193.1| 386|Homo sapiens unknown protein.
Length = 386
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 26 SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
++ C V L E ++ FS FG++ +IR+FP K V + SA A+++
Sbjct: 215 TVYCGGVTSGLTEQLM-RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS 268
>AB209260-1|BAD92497.1| 183|Homo sapiens TIA1 cytotoxic
granule-associated RNA-binding protein-like 1 isoform 2
variant protein.
Length = 183
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22 NPKS-SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
+PK+ ++ C + L + ++ FS FG++ +IR+FP+K V + SA A+++
Sbjct: 80 SPKNCTVYCGGIASGLTDQLM-RQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 138
>AB209211-1|BAD92448.1| 464|Homo sapiens TIA1 protein variant
protein.
Length = 464
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 26 SITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERAVLN 80
++ C V L E ++ FS FG++ +IR+FP K V + SA A+++
Sbjct: 294 TVYCGGVTSGLTEQLM-RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS 347
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 204 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
>AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine
tract-binding protein 1 isoform c variant protein.
Length = 329
Score = 32.7 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLN 80
FSKFG V KI F K +++Y +PVSA+ A L+
Sbjct: 221 FSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 257
>M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human
alternative splicing factor mRNA, complete cds. ).
Length = 248
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human
alternative splicing factor mRNA, complete cds. ).
Length = 292
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein.
Length = 201
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 42 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 100
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 101 DAVYGRDGYD 110
>AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.58
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 PFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKK---QMCIVEYEEPVSAE 75
P GN I N+P D+ + F K+G ++ I L ++ VE+E+P AE
Sbjct: 10 PAGNNDCRIYVGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 68
Query: 76 RAVLNAGAFD 85
AV +D
Sbjct: 69 DAVYGRDGYD 78
>BC016582-1|AAH16582.1| 532|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AL357150-5|CAH70269.1| 531|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 531
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AL357150-4|CAH70267.1| 537|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 537
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AL357150-3|CAH70266.1| 536|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 536
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AL357150-2|CAH70268.1| 532|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AF530581-1|AAM94625.1| 536|Homo sapiens non-neuronal splice
variant nPTB4 protein.
Length = 536
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AF530580-1|AAM94624.1| 537|Homo sapiens non-neuronal splice
variant nPTB3 protein.
Length = 537
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AF176085-1|AAF14284.1| 531|Homo sapiens neural polypyrimidine
tract binding protein protein.
Length = 531
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AB051233-1|BAB71743.1| 356|Homo sapiens PTB-like protein S
protein.
Length = 356
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>AB051232-1|BAB71742.1| 532|Homo sapiens PTB-like protein L
protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A++A L A DG
Sbjct: 201 FSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL---ALDG 240
>BC111739-1|AAI11740.1| 558|Homo sapiens RBM26 protein protein.
Length = 558
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 72 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 131
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 132 ATYEEAKKAISSTEAVLN 149
>BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein.
Length = 983
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 518 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 577
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 578 ATYEEAKKAISSTEAVLN 595
>BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 518 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 577
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 578 ATYEEAKKAISSTEAVLN 595
>AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 518 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 577
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 578 ATYEEAKKAISSTEAVLN 595
>AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 519 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 578
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 579 ATYEEAKKAISSTEAVLN 596
>AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 518 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 577
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 578 ATYEEAKKAISSTEAVLN 595
>AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 519 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 578
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 579 ATYEEAKKAISSTEAVLN 596
>AK027456-1|BAB55125.1| 680|Homo sapiens protein ( Homo sapiens
cDNA FLJ14550 fis, clone NT2RM2001696. ).
Length = 680
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 215 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 274
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 275 ATYEEAKKAISSTEAVLN 292
>AK027339-1|BAB55046.1| 534|Homo sapiens protein ( Homo sapiens
cDNA FLJ14433 fis, clone HEMBA1006676. ).
Length = 534
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 14 SPGVEP---FGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLF----PKKQMC-I 65
SPG + FGN + + VP +L + +HFS+FG + +++ P+ +
Sbjct: 72 SPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQF 131
Query: 66 VEYEE---PVSAERAVLN 80
YEE +S+ AVLN
Sbjct: 132 ATYEEAKKAISSTEAVLN 149
>X16135-1|CAA34261.1| 558|Homo sapiens protein ( Human mRNA for
novel heterogeneous nuclear RNP protein, L protein. ).
Length = 558
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 8 PRKVPKSPGVEPFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVE 67
P K P SP V G + V DL EA +FG + + + PKK+ +VE
Sbjct: 64 PHKTPASPVVHIRG-----LIDGVVEADLVEA------LQEFGPISYVVVMPKKRQALVE 112
Query: 68 YEEPVSAERAV 78
+E+ + A AV
Sbjct: 113 FEDVLGACNAV 123
>BC069184-1|AAH69184.1| 558|Homo sapiens HNRPL protein protein.
Length = 558
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 8 PRKVPKSPGVEPFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVE 67
P K P SP V G + V DL EA +FG + + + PKK+ +VE
Sbjct: 64 PHKTPASPVVHIRG-----LIDGVVEADLVEA------LQEFGPISYVVVMPKKRQALVE 112
Query: 68 YEEPVSAERAV 78
+E+ + A AV
Sbjct: 113 FEDVLGACNAV 123
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 31 NVPDDLFEAATAKKHFSKFGRVQKIRLFPKK 61
N+P+++ E + HF ++GRV+ +++ PK+
Sbjct: 12 NLPENVREEKIIE-HFKRYGRVESVKILPKR 41
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 31 NVPDDLFEAATAKKHFSKFGRVQKIRLFPKK 61
N+P+++ E + HF ++GRV+ +++ PK+
Sbjct: 12 NLPENVREEKIIE-HFKRYGRVESVKILPKR 41
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 31 NVPDDLFEAATAKKHFSKFGRVQKIRLFPKK 61
N+P+++ E + HF ++GRV+ +++ PK+
Sbjct: 12 NLPENVREEKIIE-HFKRYGRVESVKILPKR 41
>AB044547-1|BAB18649.1| 589|Homo sapiens heterogeneous nuclear
ribonucleoprotein L protein.
Length = 589
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 8 PRKVPKSPGVEPFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVE 67
P K P SP V G + V DL EA +FG + + + PKK+ +VE
Sbjct: 95 PHKTPASPVVHIRG-----LIDGVVEADLVEA------LQEFGPISYVVVMPKKRQALVE 143
Query: 68 YEEPVSAERAV 78
+E+ + A AV
Sbjct: 144 FEDVLGACNAV 154
>BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein.
Length = 558
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 208 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 247
>BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulator
of differentiation 1 (S. pombe) protein.
Length = 618
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 245 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 284
>AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 202 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 241
>AL158824-9|CAI12353.1| 524|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 524
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 174 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 213
>AL158824-8|CAI12354.1| 457|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 457
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 107 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 146
>AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 202 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 241
>AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein.
Length = 521
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 46 FSKFGRVQKIRLFPKKQ--MCIVEYEEPVSAERAVLNAGAFDG 86
FSKFG V KI F K +++Y +PV+A A + A DG
Sbjct: 171 FSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM---ALDG 210
>U69546-1|AAB09040.1| 490|Homo sapiens RNA-binding protein BRUNOL3
protein.
Length = 490
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 425 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 481
Query: 100 R 100
R
Sbjct: 482 R 482
>BC036391-1|AAH36391.1| 521|Homo sapiens CUGBP2 protein protein.
Length = 521
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 456 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 512
Query: 100 R 100
R
Sbjct: 513 R 513
>BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 24 KSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
K+ I N+P AA ++ F +FG + ++ L IVE+ EP+ A +A
Sbjct: 586 KTVILVKNLPAGTL-AAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKA 638
>BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 24 KSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
K+ I N+P AA ++ F +FG + ++ L IVE+ EP+ A +A
Sbjct: 586 KTVILVKNLPAGTL-AAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKA 638
>AL157704-2|CAH70231.1| 498|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 498
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 433 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 489
Query: 100 R 100
R
Sbjct: 490 R 490
>AL157704-1|CAH70230.1| 490|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 490
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 425 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 481
Query: 100 R 100
R
Sbjct: 482 R 482
>AL136320-2|CAI20168.1| 498|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 498
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 433 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 489
Query: 100 R 100
R
Sbjct: 490 R 490
>AL136320-1|CAI20169.1| 490|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 490
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 425 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 481
Query: 100 R 100
R
Sbjct: 482 R 482
>AF432906-1|AAL27627.1| 488|Homo sapiens neuroblastoma
apoptosis-related RNA-binding protein isoform 4 protein.
Length = 488
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 423 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 479
Query: 100 R 100
R
Sbjct: 480 R 480
>AF295068-3|AAK72223.1| 484|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 3 protein.
Length = 484
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 419 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 475
Query: 100 R 100
R
Sbjct: 476 R 476
>AF295068-2|AAK92699.1| 490|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 1 protein.
Length = 490
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 425 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 481
Query: 100 R 100
R
Sbjct: 482 R 482
>AF295068-1|AAK72224.1| 509|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 2 protein.
Length = 509
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 444 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 500
Query: 100 R 100
R
Sbjct: 501 R 501
>AF090694-1|AAD13761.1| 509|Homo sapiens apoptosis-related RNA
binding protein protein.
Length = 509
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 444 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 500
Query: 100 R 100
R
Sbjct: 501 R 501
>AF090693-1|AAD13760.1| 508|Homo sapiens apoptosis-related RNA
binding protein protein.
Length = 508
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 443 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 499
Query: 100 R 100
R
Sbjct: 500 R 500
>AF036956-1|AAD02074.1| 490|Homo sapiens neuroblastoma
apoptosis-related RNA binding protein protein.
Length = 490
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 46 FSKFGRVQKIRLFPKKQM----CI--VEYEEPVSAERAVLNAGAFDGFMFDVTRSKQRTR 99
F FG V ++F KQ C V Y+ PVSA+ A+ A +GF + R K + +
Sbjct: 425 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI---QAMNGFQIGMKRLKVQLK 481
Query: 100 R 100
R
Sbjct: 482 R 482
>AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein.
Length = 973
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 24 KSSITCSNVPDDLFEAATAKKHFSKFGRVQKIRLFPKKQMCIVEYEEPVSAERA 77
K+ I N+P AA ++ F +FG + ++ L IVE+ EP+ A +A
Sbjct: 599 KTVILVKNLPAGTL-AAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKA 651
>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
Length = 1217
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 3 PGPAFPRKVPKSPGVEPFGNPKSSITCSNVPDDLFEAAT 41
P P P P +P EP G S I CS P L + ++
Sbjct: 220 PPPPPPPPPPPAPASEPKGGLTSPIFCSTKPKKLLKTSS 258
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,979,096
Number of Sequences: 224733
Number of extensions: 682763
Number of successful extensions: 1739
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 82
length of query: 137
length of database: 73,234,838
effective HSP length: 82
effective length of query: 55
effective length of database: 54,806,732
effective search space: 3014370260
effective search space used: 3014370260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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