GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005307-TA|BGIBMGA005307-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   0.89 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   8.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   8.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 14  SPGVEPFGNPKSSITCSNVPDDLFEAATAKKHFSKFGRVQKI 55
           SP V+   +  +S TCS      F     K H S+   +QK+
Sbjct: 277 SPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKL 318


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 4   GPAFPRKVPKSPGVEPFGNPKSSITCSNVPDDL 36
           G  F R +  +P V     P S+IT +NV D L
Sbjct: 89  GGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVL 121


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 48  KFGRVQKIRLFPKKQMCIVEYEE 70
           K G    + L P K MC+  ++E
Sbjct: 395 KSGDAAIVMLQPTKPMCVEAFQE 417


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 25  SSITCSNVPDDLFEAATAKK 44
           +S+TC    D+   ++T+KK
Sbjct: 264 NSVTCDRPSDEAEPSSTSKK 283


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,132
Number of Sequences: 429
Number of extensions: 1634
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)