GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005306-TA|BGIBMGA005306-PA|IPR000253|Forkhead-
associated, IPR008984|SMAD/FHA
         (796 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   1.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   9.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   9.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 382 VRALPDYVKMLLPQQLLNKVGIKIVSADGKSAKEFELILKKNNAYNSENKDTEKLEAEED 441
           +R LP  + M +P  LLN +    +   G+S K+ +       A  S +  +    A   
Sbjct: 341 IRRLPKLLLMRVPDDLLNDLAAHKMHGRGRSGKKSKFNAAVAAAVQSSSIVSSPDSARHQ 400

Query: 442 GVGG 445
            +GG
Sbjct: 401 RIGG 404


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 484 CPDNNANSTYTETSNREDSPSKAEAEYAN 512
           C +NN N     T+N+ D+  K   + AN
Sbjct: 414 CVNNNQNDNIQNTNNQNDNNQKNNKKNAN 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 415 EFELILKKNNAYNSENKDTEKLEAEEDGVGGSCEEKSNEPDSCTDDEKQSRLNHEPGHEE 474
           +F   +++  + +++ +   K+ + +      C  K+ EP S    +  +     PG  E
Sbjct: 863 DFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLE 922

Query: 475 RSSP-LDGELCPDNN 488
           R+SP   G   P N+
Sbjct: 923 RASPAFSGTSSPTNS 937


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 169 LSYNPTMITPLHLKELYQLNNFVQE 193
           LS N T+ + +++++L +LNN V+E
Sbjct: 83  LSPNRTINSVVYIEQLTKLNNAVEE 107


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 235 RVHTLESMLSVGKQPDEQHLTQ 256
           +VH ++S+  +  +PD + LT+
Sbjct: 275 KVHIIDSICGIDSKPDYRELTE 296


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,199
Number of Sequences: 429
Number of extensions: 8558
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 796
length of database: 140,377
effective HSP length: 63
effective length of query: 733
effective length of database: 113,350
effective search space: 83085550
effective search space used: 83085550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)