GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005304-TA|BGIBMGA005304-PA|IPR011004|Trimeric LpxA-like
         (693 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK097517-1|BAC05084.1|  621|Homo sapiens protein ( Homo sapiens ...    33   3.4  

>AK097517-1|BAC05084.1|  621|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40198 fis, clone TESTI2019975, weakly similar to
           TRICHOHYALIN. ).
          Length = 621

 Score = 33.1 bits (72), Expect = 3.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 321 PNPIVPTTSSIDNKPHISSVYHIDIKPHVDSNPNIDT 357
           P P +PT   +   PH+ +  H+   PHV ++P++ T
Sbjct: 5   PQPHLPTHPHLPTHPHLPTHPHLPTHPHVPTHPHLPT 41


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.311    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,743,265
Number of Sequences: 224733
Number of extensions: 2917402
Number of successful extensions: 5505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5500
Number of HSP's gapped (non-prelim): 5
length of query: 693
length of database: 73,234,838
effective HSP length: 95
effective length of query: 598
effective length of database: 51,885,203
effective search space: 31027351394
effective search space used: 31027351394
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 69 (31.9 bits)