GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005304-TA|BGIBMGA005304-PA|IPR011004|Trimeric LpxA-like
         (693 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.17 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   4.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 322 NPIVPTTSSIDNKPHISSVYHIDIKPHVDSNPNIDTTSNVDTNCNVDINPNVDAI 376
           N  VPT S ++ KP +++V  +D     + N   DT ++V+       NP  D+I
Sbjct: 105 NVAVPTKSILEKKPDVTTVELVDATDPGEHNG--DTVTDVEAGLASRTNPLDDSI 157


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 20 HMFHY---PVFDKKEKLKFEAVPTLNGPFCEPKEDKTSASDKMF 60
          H  HY   PVF K++K+K +    L   F E K D  +  DK F
Sbjct: 7  HYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLD--NLMDKQF 48


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 325 VPTTSSIDNKPHISSVYHIDIKPHVDSNPNIDTTSNVDTNCNVDINPNVDAIPNVD 380
           V    ++D    +SS+  +D    VD+   +DT   +D    +D    +D +  +D
Sbjct: 450 VDRMDTMDRTDKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMDTMD 505


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 115 EIKNVTTLNEGVNQQNRKQHWSGKLRSSKGIKQNV-ISENSKNDDSNANLNL 165
           +I  +  LN+  N +N    ++G +  ++ I QN+  ++N+  D  N +L++
Sbjct: 387 KISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSI 438


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,704
Number of Sequences: 429
Number of extensions: 7644
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 5
length of query: 693
length of database: 140,377
effective HSP length: 62
effective length of query: 631
effective length of database: 113,779
effective search space: 71794549
effective search space used: 71794549
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)