GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005302-TA|BGIBMGA005302-PA|undefined
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   4.4  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 51  ILICIMFFLLYFEHVQTRHVSPDPTSDVAVVYE 83
           ++ C ++   +F + +     PD  +DV+++YE
Sbjct: 309 LITCALYDEFWFRYARWMSAQPDHLNDVSIIYE 341


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38  YAAFTLLWRTATSILICIMFFLL 60
           YA   LLW +   +L+C+M  L+
Sbjct: 968 YATDNLLWASLEGMLLCVMAILI 990


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,037
Number of Sequences: 5004
Number of extensions: 17211
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 2
length of query: 168
length of database: 2,362,478
effective HSP length: 68
effective length of query: 100
effective length of database: 2,022,206
effective search space: 202220600
effective search space used: 202220600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)