GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005302-TA|BGIBMGA005302-PA|undefined
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 499 VVDRLCLIVFTLFTVLATIVILC 521


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  VITRLTYAAFTLLWRTATSILIC 54
           V+ RL    FTL    AT +++C
Sbjct: 499 VVDRLCLIVFTLFTVLATIVILC 521


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 34  TRLTYAAFTLLWRTATSILICIMFFLLYFEHVQTRHVSPDPTSDVAVV 81
           +++TY+    LWR   +I   + +     ++      SPDP+     +
Sbjct: 96  SKVTYSG---LWRVCVAISSRMEYECSRIDYFPNEEYSPDPSDSTMAI 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,536
Number of Sequences: 429
Number of extensions: 1067
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)