GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005301-TA|BGIBMGA005301-PA|undefined
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 128 EKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 161
           EKP   + E + D A  I    K  D   +VE D
Sbjct: 505 EKPLVREIEKTIDDARFIAQHAKNKDKFESVEED 538


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 86  AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSAT 133
           A  +EI     +    KV+    QP D+  + Q  +A +  E   + T
Sbjct: 134 ATRAEIKTESIQPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGT 181


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.300    0.121    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,602
Number of Sequences: 429
Number of extensions: 1199
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
S2: 43 (21.4 bits)