Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005299-TA|BGIBMGA005299-PA|undefined
(68 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 28 1.1
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 26 3.3
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 26 3.3
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 26 3.3
08_02_0282 - 15274413-15274465,15274564-15275245 25 7.5
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 25 7.5
12_02_0346 - 17776871-17781445 25 10.0
12_02_0343 - 17748882-17753396 25 10.0
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 25 10.0
04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771... 25 10.0
04_03_0401 - 15438674-15438772,15439084-15439348,15439822-154399... 25 10.0
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 25 10.0
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 13 NFDHDKHIFTGHGGKQR--TKKEASEHTNH 40
+FDH H HGG++R + EA H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 15 DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
D++KH GH +Q +S +N ++ + + EHN+ + +K
Sbjct: 493 DNEKHSM-GHKDEQYYSDSSSSRSNRHSRRSREKRYYSDSSSPEHNRHSGRSK 544
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 3 EAFFDEYDYYNFDHDKHIFTGHGGK-QRTKKEASE 36
+ + D+YD Y+ D+D + TGH Q KE E
Sbjct: 13 DEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKE 47
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 3 EAFFDEYDYYNFDHDKHIFTGHGGK-QRTKKEASE 36
+ + D+YD Y+ D+D + TGH Q KE E
Sbjct: 13 DEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKE 47
>08_02_0282 - 15274413-15274465,15274564-15275245
Length = 244
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 36 EHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
E + F P H+ +V +++ + +N K+ KH
Sbjct: 48 EESFEFAPDTHANMLVNEMITSHYNGKSGIRKH 80
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 13 NFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
+F++DKH +G G KE +E + SGH + + L ++ K K
Sbjct: 578 DFENDKHSRSGDGVLGVDPKECNECSISSSSSGHKQILRRYLFGSKLRKMYKKQK 632
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 43 PSGHSRKIVTKLMNAEHNKKTSNT 66
PSGHS+ T+ ++ E KT+ T
Sbjct: 220 PSGHSKNAKTQCIDLEKRPKTTPT 243
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 43 PSGHSRKIVTKLMNAEHNKKTSNT 66
PSGHS+ T+ ++ E KT+ T
Sbjct: 221 PSGHSKNAKTQCIDLEKRPKTTPT 244
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 21 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKL 54
FTG G + EA + T +G +RK++ ++
Sbjct: 451 FTGDGRNKTVSLEAKQETKTLIRAGDTRKVIGRV 484
>04_04_0966 +
29776340-29776433,29776581-29776682,29777038-29777154,
29777428-29777621,29777702-29777807,29777908-29778055,
29778201-29778337,29778436-29778602,29778681-29778974
Length = 452
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 16 HDKHIFTGHGGKQRTKKE 33
HD H+FT H K R +E
Sbjct: 84 HDVHVFTSHHDKNRCFEE 101
>04_03_0401 -
15438674-15438772,15439084-15439348,15439822-15439915,
15439997-15440099,15440342-15440384,15440420-15440484
Length = 222
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 51 VTKLMNAEHNKKTSNTKH 68
+ + N++HNK+ +TKH
Sbjct: 101 IESIYNSQHNKRRKSTKH 118
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 13 NFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
++ H KH + H +R +KE+S H R+I K N ++ H
Sbjct: 407 DYSHSKHERSSHTEHRRDRKESSASDKH-----RHREIKDKTSKYSSNMESERESH 457
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.128 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,068
Number of Sequences: 37544
Number of extensions: 73167
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 12
length of query: 68
length of database: 14,793,348
effective HSP length: 48
effective length of query: 20
effective length of database: 12,991,236
effective search space: 259824720
effective search space used: 259824720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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