GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005299-TA|BGIBMGA005299-PA|undefined
         (68 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA...   118   8e-28
AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p pro...    28   1.8  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    28   1.8  
AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    27   2.4  
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    27   3.2  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    27   3.2  
AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p pro...    27   3.2  
AE014134-2265|AAF53230.1|  255|Drosophila melanogaster CG16800-P...    26   5.6  
BT030421-1|ABO52841.1|  491|Drosophila melanogaster IP17579p pro...    26   7.4  
BT003753-1|AAO41417.1|  343|Drosophila melanogaster RH05737p pro...    26   7.4  
AY051674-1|AAK93098.1|  366|Drosophila melanogaster LD22649p pro...    26   7.4  
AE014297-1831|AAG22152.1|  343|Drosophila melanogaster CG12207-P...    26   7.4  
AE014297-1830|AAN13603.1|  366|Drosophila melanogaster CG12207-P...    26   7.4  
AE014297-1829|AAN13602.1|  366|Drosophila melanogaster CG12207-P...    26   7.4  
U36792-1|AAC46928.1|  723|Drosophila melanogaster DHR96 protein.       25   9.8  
AY051486-1|AAK92910.1|  723|Drosophila melanogaster GH14435p pro...    25   9.8  
AE014297-3687|AAF56379.1|  723|Drosophila melanogaster CG11783-P...    25   9.8  

>AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA
          protein.
          Length = 69

 Score =  118 bits (285), Expect = 8e-28
 Identities = 49/62 (79%), Positives = 56/62 (90%)

Query: 1  MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 60
          MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN  +N
Sbjct: 1  MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60

Query: 61 KK 62
           K
Sbjct: 61 NK 62


>AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p
          protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 16 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
          HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 34 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 85


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 16  HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 490 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541


>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 16  HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 490 HDDLIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 16  HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
           HD  I  GH G  +T  +   H    + S + ++ V K    +  K T +TK
Sbjct: 901 HDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK 952


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 16  HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
           HD  I  GH G  +T  +   H    + S + ++ V K    +  K T +TK
Sbjct: 664 HDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK 715


>AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p
           protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 16  HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
           HD  I  GH G  +T  +   H    + S + ++ V K    +  K T +TK
Sbjct: 52  HDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK 103


>AE014134-2265|AAF53230.1|  255|Drosophila melanogaster CG16800-PA
           protein.
          Length = 255

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 8   EYDYYNFDHDKHIFTGHGGKQRTKK------------EASEHTNHFDPSGHSRKIVTKLM 55
           E  +Y+ DH++     HGG + +KK            +   H  ++   GHS+K   K  
Sbjct: 149 EKKFYDEDHNEGGEEKHGGFEESKKHKKGSSFKKGHHKKGGHEENYGKKGHSKKGHKKKG 208

Query: 56  NAEHNKKTSNTK 67
           +  H KK   +K
Sbjct: 209 HKGHKKKHEESK 220


>BT030421-1|ABO52841.1|  491|Drosophila melanogaster IP17579p
           protein.
          Length = 491

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 4   AFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKT 63
           A   E + Y F H KH+      K++ KK+  +           +K   K    +  KK 
Sbjct: 424 ANIQESENYQFTHIKHVMISQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 483

Query: 64  SNTK 67
              K
Sbjct: 484 KKKK 487


>BT003753-1|AAO41417.1|  343|Drosophila melanogaster RH05737p
           protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 15  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           D D  +  GHGG    + ++ +      P   +RK +   +N   N  + + K+
Sbjct: 200 DEDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISESRKY 253


>AY051674-1|AAK93098.1|  366|Drosophila melanogaster LD22649p
           protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 15  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           D D  +  GHGG    + ++ +      P   +RK +   +N   N  + + K+
Sbjct: 223 DEDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISESRKY 276


>AE014297-1831|AAG22152.1|  343|Drosophila melanogaster CG12207-PA,
           isoform A protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 15  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           D D  +  GHGG    + ++ +      P   +RK +   +N   N  + + K+
Sbjct: 200 DEDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISESRKY 253


>AE014297-1830|AAN13603.1|  366|Drosophila melanogaster CG12207-PC,
           isoform C protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 15  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           D D  +  GHGG    + ++ +      P   +RK +   +N   N  + + K+
Sbjct: 223 DEDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISESRKY 276


>AE014297-1829|AAN13602.1|  366|Drosophila melanogaster CG12207-PB,
           isoform B protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 15  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           D D  +  GHGG    + ++ +      P   +RK +   +N   N  + + K+
Sbjct: 223 DEDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISESRKY 276


>U36792-1|AAC46928.1|  723|Drosophila melanogaster DHR96 protein.
          Length = 723

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30  TKKEASEHTNHF-DPSGHSRKIVTKLMNAEHNKKTSNTK 67
           ++K+A    +H  D  G + KI++K MN+  N  T  TK
Sbjct: 207 SQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTK 245


>AY051486-1|AAK92910.1|  723|Drosophila melanogaster GH14435p
           protein.
          Length = 723

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30  TKKEASEHTNHF-DPSGHSRKIVTKLMNAEHNKKTSNTK 67
           ++K+A    +H  D  G + KI++K MN+  N  T  TK
Sbjct: 207 SQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTK 245


>AE014297-3687|AAF56379.1|  723|Drosophila melanogaster CG11783-PA
           protein.
          Length = 723

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30  TKKEASEHTNHF-DPSGHSRKIVTKLMNAEHNKKTSNTK 67
           ++K+A    +H  D  G + KI++K MN+  N  T  TK
Sbjct: 207 SQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTK 245


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.313    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,921,456
Number of Sequences: 52641
Number of extensions: 143171
Number of successful extensions: 305
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 17
length of query: 68
length of database: 24,830,863
effective HSP length: 48
effective length of query: 20
effective length of database: 22,304,095
effective search space: 446081900
effective search space used: 446081900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)