GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005299-TA|BGIBMGA005299-PA|undefined
         (68 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    32   0.043
Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    28   0.70 
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    28   0.70 
U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    27   1.2  
U14634-2|AAA21560.2|  423|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-li...    27   2.1  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z98866-13|CAB11552.1|  327|Caenorhabditis elegans Hypothetical p...    25   8.6  
U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical pr...    25   8.6  
U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
          protein ZK632.9 protein.
          Length = 62

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 25 GGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 62
          G  +RTK +  EH +   P G +RK+V    N E  +K
Sbjct: 23 GSGKRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 2   SEAFFD-EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 60
           S+ F D + D  +     H+ +   G+   KKE+ + T+  +PS       T+  N E +
Sbjct: 139 SDCFSDKDLDAVSASSSSHLISEEDGEVGEKKESEQPTDMVEPSSAPTTEETETENEEED 198

Query: 61  KKTSNTK 67
            K    K
Sbjct: 199 DKEKTDK 205


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 2   SEAFFD-EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 60
           S+ F D + D  +     H+ +   G+   KKE+ + T+  +PS       T+  N E +
Sbjct: 139 SDCFSDKDLDAVSASSSSHLISEEDGEVGEKKESEQPTDMVEPSSAPTTEETETENEEED 198

Query: 61  KKTSNTK 67
            K    K
Sbjct: 199 DKEKTDK 205


>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 9   YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAE 58
           Y+ Y+F+   H+ TG   ++  K E  E      P G+  ++   L   E
Sbjct: 265 YNNYDFEILSHLATGTKPERERKSEKEESAKTSQPRGNEEELKNLLFGRE 314


>U14634-2|AAA21560.2|  423|Caenorhabditis elegans Hypothetical
          protein T15B12.2 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 25 GGKQRTKKEA---SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 67
          G +QRT+KEA      T    P G+ +K V KL++     KT+ TK
Sbjct: 4  GDRQRTEKEAVTKDGQTGSKKP-GYKKKPVKKLLSNNTKVKTNKTK 48


>Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical
           protein R04F11.4 protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 10  DYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKI 50
           D   FD+   I  G  G +   +   E    FDPS H +++
Sbjct: 298 DAGTFDNISEINDGSEGGENENEGEEEEQIQFDPSNHEKRV 338


>U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-like
           protein protein16 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 17  DKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTK 53
           ++ +   HG   R K+  SEH  H DP  H+ K  T+
Sbjct: 78  EEEVEISHGMHHREKRH-SEHLPHPDPPSHTAKRSTE 113


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 13  NFDHDKH-IFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 68
           N D  KH     H G+ R   +   +  + D +GH+ ++   + +   +    +T+H
Sbjct: 105 NMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRVKRSIDDDPSDTTIDHTRH 161


>Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical
           protein T16H12.1 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 1   MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 60
           M  A   EY++ NF +D      H  ++ T K  S  T  F  + HS    T+    E  
Sbjct: 229 MPTAIESEYNF-NFSNDDISTEIHHNEEPTSKPVSSETCKFCGNRHSTDECTEYTTGESR 287

Query: 61  K 61
           +
Sbjct: 288 R 288


>Z98866-13|CAB11552.1|  327|Caenorhabditis elegans Hypothetical
           protein Y49E10.16 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3   EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFD--PSGHS 47
           +AFFD    + + +D  +F  +GG Q+  ++       ++   +GHS
Sbjct: 150 KAFFDSGSVFEYFYDAFLFQWNGGLQQDLRKLKYQYPDYEIWVTGHS 196


>U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical
           protein C17G10.3 protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 13  NFDHDKHIFTGHGGKQRTKKEASEHTNHFD 42
           +F H    FT H   +R   ++S HT +FD
Sbjct: 299 SFFHRTSAFTWHQIAERQPPKSSYHTENFD 328


>U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical
           protein F32A5.3 protein.
          Length = 574

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 6   FDEYDYYNFDHDKHIFTG--HGGKQRTKKEASE 36
           FD+Y++Y   +DK +F      G +R K+ A +
Sbjct: 290 FDQYNFYQECYDKSVFQAPPPAGGKRHKRSAMQ 322


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,215
Number of Sequences: 27539
Number of extensions: 70173
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 12,573,161
effective HSP length: 48
effective length of query: 20
effective length of database: 11,251,289
effective search space: 225025780
effective search space used: 225025780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)