GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005298-TA|BGIBMGA005298-PA|undefined
         (116 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   0.70 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   8.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.6  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 47 IAGLVVLVISLGLAGYFIGGADYKAAHR 74
          +A ++ L++SL     + GG+D++ A R
Sbjct: 20 LARMLALLVSLHRLSIYSGGSDWRVAGR 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 1   MSDRQLLRESSMKKPGKPNVLKKNRHVLIKLPDDDFRPYKTKTKLTIAGLVV 52
           M D   LRE +     KP V+K  +   IK     FR  +TK   T+ G++V
Sbjct: 415 MGDEMSLRELTQVTEEKPRVMKMGKR-NIKAQVKRFR-METKAAKTL-GIIV 463


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 16  GKPNVLKKNR-HVLIKLPDDDFRPYKTKTKLTIAG 49
           GK  VL     H+    P+D ++ Y+ +TK  + G
Sbjct: 155 GKYLVLPSGELHIRDVGPEDGYKTYQCRTKHRLTG 189


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 47  IAGLVVLVISLGL 59
           +AG+V+ V SLGL
Sbjct: 133 VAGIVIGVTSLGL 145


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 47  IAGLVVLVISLGL 59
           +AG+V+ V SLGL
Sbjct: 104 VAGIVIGVTSLGL 116


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 5   QLLRESSMKKPGKPNVLKKNRHVLIK 30
           QL+ E S + PG   ++++++  L+K
Sbjct: 387 QLIVEFSKRLPGFDELMREDQIALLK 412


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,028
Number of Sequences: 429
Number of extensions: 1276
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 116
length of database: 140,377
effective HSP length: 50
effective length of query: 66
effective length of database: 118,927
effective search space:  7849182
effective search space used:  7849182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)