GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005296-TA|BGIBMGA005296-PA|undefined
         (50 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   4.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    18   8.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 1  MEMNGTEPRGEE 12
          + ++GTEPR +E
Sbjct: 52 LPIHGTEPRSKE 63


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 32 LLNAYILFVII 42
          LLNAY+ F ++
Sbjct: 57 LLNAYVRFKLV 67


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7947
Number of Sequences: 429
Number of extensions: 93
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 50
length of database: 140,377
effective HSP length: 30
effective length of query: 20
effective length of database: 127,507
effective search space:  2550140
effective search space used:  2550140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)