GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005295-TA|BGIBMGA005295-PA|undefined
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    24   2.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    23   3.7  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    23   4.9  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     23   4.9  

>SPAC23D3.12 |||inorganic phosphate transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 15 LADVAQFDCRRHHMAFT 31
          LADVA+ D RRH +  T
Sbjct: 23 LADVAESDTRRHWLGLT 39


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 32  NGNTTRNKLLQEIKGTA 48
           NG+T +NK+++ + GTA
Sbjct: 174 NGHTFKNKVVKALSGTA 190


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 26  HHMAFTNGNTTRNKLLQEI 44
           HH  F  G+T R + LQ++
Sbjct: 861 HHFGFAPGSTPRREWLQKL 879


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 17  DVAQFDCRRHHMAFTNGNTTRNKLLQEIKGTAN 49
           D   +  R    +  NG+   N+LLQ   G AN
Sbjct: 243 DTGNYVLRFTSTSAANGSVNENQLLQAAHGIAN 275


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.130    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,487
Number of Sequences: 5004
Number of extensions: 5630
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)