GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005294-TA|BGIBMGA005294-PA|undefined
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     24   9.4  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    24   9.4  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    24   9.4  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 107 LKINASLSKMIVRCKYTVFRNTTDMIYDANEQDSNLNSPFRFQQVQNTGDLA 158
           L + + L K+  R KY   +  ++  +DA+E+ S     F ++++    +++
Sbjct: 224 LSMTSILEKIFERLKYIDVKTDSEDFWDASEEHSIKGEEFHYKKITEGDEIS 275


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 26  FQDTWADVQRPLENAIVSALKESYGYRGMNVFV 58
           FQ  W+ ++  L+  +VS +K +  YR +  ++
Sbjct: 281 FQGVWSIIKSWLDPVVVSKVKFTRNYRDLQQYI 313


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 95  MPQVTFLLPDNVLKINASLSKMIVRCKY 122
           +P + F+L +N+  + A L ++I  C +
Sbjct: 652 LPMINFVLDNNIFDVYAELFEIIDGCTF 679


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 3   LEINSDNIGGAIMKYFESDTVREFQD 28
           LEI+++  G A+MK +  + + E QD
Sbjct: 142 LEIDAEENGSALMKKYMGEDLCELQD 167


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 32  DVQRPLENAIVSALKESYGYRGMNVFVRKTRDLHSIATGYYHN 74
           DV  P+E  I    KE YG  G+ +       L +     Y+N
Sbjct: 820 DVHEPIEKKIEIIAKEMYGADGIELSPLAKERLETFTKQGYNN 862


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,412
Number of Sequences: 5004
Number of extensions: 23101
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 2,362,478
effective HSP length: 67
effective length of query: 91
effective length of database: 2,027,210
effective search space: 184476110
effective search space used: 184476110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)