GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005293-TA|BGIBMGA005293-PA|IPR010978|tRNA-binding arm
         (610 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   3.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              24   4.2  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 315 REKPDEYLSSFFDKPRNVEGKYKNYSRNKLINIL 348
           R K  + +SS  +K  +    YKNY++    NI+
Sbjct: 308 RSKESKIISSLSNKTIHNNNNYKNYNKKLYYNII 341


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 13/57 (22%), Positives = 30/57 (52%)

Query: 72  EIISFRLSQETIKSANVELKKELLIAKESKLDIIERIKNGEKRYEELWLECKSRFES 128
           EI+ ++   E  +   VE+ +    +  +K  ++E  +NG+++ +   +E +S  ES
Sbjct: 175 EIMEYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSSTIENESETES 231


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 330  RNVEGKYKNYSRNKLINILEDVK 352
            R   GKY+NY R+ L+  +  V+
Sbjct: 1034 RPKRGKYRNYDRDSLVEAVRAVQ 1056


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 24  VVFSSQCIKAQAFLVDKLRK-----QTDRLKEICNFMSSANVKLESEIKFAENEIISFRL 78
           V+ S+ C+   A  +D+L+      Q+  +KEI       +   E +I   +  ++ F  
Sbjct: 5   VIISAICVCVSAMTLDELKSGLHTVQSVCMKEIGTAQQIIDDINEGKINMDDENVLLF-- 62

Query: 79  SQETIKSANVELKKELLIAKESKLDIIERIKNGEKRYEELWLECK--SRFESIPYVQKLL 136
            + T+K  NV + +     ++   DI+  + N +   ++L  EC   S   ++  + K+L
Sbjct: 63  IECTMKKFNV-VDENANFNEKISSDIVRAVLN-DNEADQLLAECSPISDPNALIKISKIL 120

Query: 137 QAQNKMKEL 145
           +   K K +
Sbjct: 121 ECFFKYKTI 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,455
Number of Sequences: 429
Number of extensions: 7810
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 610
length of database: 140,377
effective HSP length: 62
effective length of query: 548
effective length of database: 113,779
effective search space: 62350892
effective search space used: 62350892
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)