GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005291-TA|BGIBMGA005291-PA|undefined
         (88 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.24 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.24
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 11 AQSKTLTKHEPIIHLRTATTTPTGAILPEPQKQPFG 46
          A S TL K E   HL  A T+ T A  P P   P G
Sbjct: 27 AASLTLVKAETPEHL--AGTSTTAAATPTPPSVPVG 60


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 36  ILPEPQKQPF 45
           +LP+P+K PF
Sbjct: 203 MLPDPKKTPF 212


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 36  ILPEPQKQPF 45
           +LP+P+K PF
Sbjct: 203 MLPDPKKTPF 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,127
Number of Sequences: 429
Number of extensions: 675
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 140,377
effective HSP length: 48
effective length of query: 40
effective length of database: 119,785
effective search space:  4791400
effective search space used:  4791400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)