GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005290-TA|BGIBMGA005290-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (278 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 3   VIFCEQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTF 44
           VIF E+ N LE      +     + +R Y  +   P+P T F
Sbjct: 483 VIFSERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPGTVF 524


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 9/40 (22%)

Query: 12 LEISPTSMVAAAGFQHIR---------LYDLSSANPDPVT 42
          L I+ T +V+ AG++H R          YD SS+N D ++
Sbjct: 15 LSIASTYVVSVAGYKHSRRHRDFTVAESYDASSSNSDSLS 54


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 13  EISPTSMVAAAGFQHIRLYDLSS 35
           ++SP ++   +GF HI +  +SS
Sbjct: 108 DLSPAAVSYTSGFYHIPVIGISS 130


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 188 FSPDSTMLVTTSGDCSAKIWRTSDW 212
           FSP S +       CSA +WR   W
Sbjct: 534 FSPLSLLGGPLVMVCSAPVWRFQPW 558


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 5/23 (21%)

Query: 62 WMYTGGED-----CTARIWDPRA 79
          W+  GG D     CT R+ DP A
Sbjct: 33 WLSEGGNDTRSADCTLRVLDPGA 55


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 101 HPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMMA 150
           +PD S     D SGI+  + +  D+ ++L       I +I +  + K++A
Sbjct: 111 YPDWSWANYKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLMCSPKLLA 160


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,531
Number of Sequences: 429
Number of extensions: 3630
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 278
length of database: 140,377
effective HSP length: 57
effective length of query: 221
effective length of database: 115,924
effective search space: 25619204
effective search space used: 25619204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)