GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005289-TA|BGIBMGA005289-PA|IPR009071|High mobility group
box, IPR000910|HMG1/2 (high mobility group) box
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   0.94 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   6.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 0.94
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 14 LWLNSAREQIKSENPGLRV 32
          +W  + R + K +NPGL V
Sbjct: 54 IWFQNRRTKWKKQNPGLDV 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 39  GGEIWKSMKDK 49
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 23  IKSENPGLRVTEIAKK 38
           I ++ PGLR TE+ ++
Sbjct: 346 IAADRPGLRNTELVER 361


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 27  NPGLRVTEIAKKGGEIWKSMKDKTEW 52
           NPG  +    +   EIWK  + K ++
Sbjct: 184 NPGNPLAHYDQTAIEIWKQCEGKIDY 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586
Number of Sequences: 429
Number of extensions: 512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)