Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005288-TA|BGIBMGA005288-PA|IPR000969|Structure-specific
recognition protein, IPR000910|HMG1/2 (high mobility group) box,
IPR009071|High mobility group box
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 288 2e-78
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 40 0.001
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 40 0.001
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 40 0.002
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 31 0.54
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 31 0.54
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 2.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 29 2.9
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 2.9
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 28 3.8
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 27 6.7
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 288 bits (706), Expect = 2e-78
Identities = 164/472 (34%), Positives = 256/472 (54%), Gaps = 39/472 (8%)
Query: 22 NDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLK 81
++I + +F + L++ LK+ GF + + + + K N++ + +KE S+K
Sbjct: 45 SEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQEDLDDLINVIKQNFDMGIEQKEFSIK 104
Query: 82 GWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN-TGKNEVTLEFHQNDDTPV------ 134
GWNWG A F G+ L F+V + AFEIP+ V+ N +GKNEV LEF DD +
Sbjct: 105 GWNWGEANFLGSELVFDVNSRPAFEIPISAVTNTNLSGKNEVALEFSTTDDKQIPSAQVD 164
Query: 135 SLMEMRFHIPTSEVANDL--------DAVEAFHQQVMNKASVISVSGDAIAIFRELQCLT 186
L+EMR ++P + D +A F++ + +A + +GDAI F E+ LT
Sbjct: 165 ELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYESLKERADIGQAAGDAIVSFSEILLLT 224
Query: 187 PRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTR 246
PRGRYDI +++T +L GKT+DYK+ S++ LFLLP D + + FV+ L+PP++QGQTR
Sbjct: 225 PRGRYDIDMYETCMRLRGKTYDYKVEYSSINSLFLLPKPDEQHVVFVIGLEPPLRQGQTR 284
Query: 247 YHYLVLLFGIEEETTVELPFTEEELKDKYEGKITKELSGPTYEVLAKIMKVIINRRVTGP 306
Y +LV F +E+ V+L E LK+KY K+ P +EV+++I + + R+VT P
Sbjct: 285 YPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVKASYDQPAFEVVSQIFRGLTGRKVTTP 344
Query: 307 GDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGG--ASST 364
+FL H A+ CSYKA G LY LDK F+++ KP + + +I V +R G S+
Sbjct: 345 AEFLSHEGHAAVKCSYKANEGQLYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAA 404
Query: 365 KSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKN--TGKNDKALYDDDFGDSD 422
++FD L+ G+ + FS+I + E L ++ SK++ + N + + L D D
Sbjct: 405 RTFDLTFTLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLADETQQTLLTSALDDED 464
Query: 423 TEKEPDAYLERVKAEAKXXXXXXXXXXXXXXXXXFNPDKAKESDVAEEYDTN 474
+E D +E +E + F + ESDVAEEYD N
Sbjct: 465 --EEGDEEMEEALSEDE----------------DFQAE--SESDVAEEYDEN 496
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 535 RPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRD 573
RP AF+L+ E +++ NP I ++V+K GE+WR+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 535 RPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRD 573
RP AF+L+ E +++ NP I ++V+K GE+WR+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 529 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 574
D N PKR +AFM + ENR+K+ +NP ++ G+ W++L
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 315 TPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELK 374
T + +YKA G+L+ L G ++ + P I F E+AS+ ++F E
Sbjct: 200 TYGVEANYKAKDGHLFFLRTGILWGFRKP--ILFIELASIQHFSYSNVLQRTFTVNFEAG 257
Query: 375 LGSVHTFSSIEKGEYDKLFNYISSKKL 401
G++++F +++ + + +Y + L
Sbjct: 258 -GTIYSFDMVDQSVFRAVNDYATKHGL 283
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.1 bits (67), Expect = 0.54
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 311 GHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGGASSTK 365
G KT I C A G L P KG ++H P + E +A V A + K
Sbjct: 37 GSGKTTIIECLKYATTGILPPNTKGGAFIHDPKICGEKEVLAQVKLAFRNTNQVK 91
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 395 YISSKKLHVKNTGKNDKAL-----YDDDFGDSDTEKEPDAYLERVKAE 437
Y + +H++ D ++ +DDD SD E AYLE +KAE
Sbjct: 473 YYGNIPVHIQENAPKDSSIPPLFEFDDDLELSDLTPEQFAYLEMLKAE 520
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 361 ASSTKSFDFEIELKLGSVHTFSSIEKGEYDKLF--NYISSKKLHVK-NTGKNDKALYDDD 417
A + KS+D E K+ S+ TF +E + K++ + +KL + + ++AL+DDD
Sbjct: 443 AITAKSYDTLDERKIRSLTTFEYLEIKNFQKIYFTGSENCQKLSKQIPLDECNEALFDDD 502
Query: 418 FGD 420
GD
Sbjct: 503 NGD 505
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 529 DVNAPKRPATAFMLWLNENRKKIIEENPGIK---VTEVAKRAGELWRDLKD 576
D PKRP +A+ L+ +N++ I+E+ G K V EV K E W L +
Sbjct: 113 DPAQPKRPPSAYNLF-QKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSE 162
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 219 LFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFG 255
LF+ H D MFF ++D Q TR H L L G
Sbjct: 35 LFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG 71
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 312 HHKTPAIACS--YKAAAGYLYPLDKGFIYVHKPPVHIRFEE 350
HH TP + CS YK + Y Y L+ I + P + F E
Sbjct: 302 HHATPVVVCSGIYKLSPVYPYDLE-SIIQLSSPDKIMSFNE 341
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,974
Number of Sequences: 5004
Number of extensions: 105167
Number of successful extensions: 271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 12
length of query: 700
length of database: 2,362,478
effective HSP length: 78
effective length of query: 622
effective length of database: 1,972,166
effective search space: 1226687252
effective search space used: 1226687252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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