GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005288-TA|BGIBMGA005288-PA|IPR000969|Structure-specific
recognition protein, IPR000910|HMG1/2 (high mobility group) box,
IPR009071|High mobility group box
         (700 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   3.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   4.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   4.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   4.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   8.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 237 DPPIKQGQTRYHYLVLLFGIEEETTVELPFTEEELKDKYEGKITKEL 283
           D PI Q     H+  +L+        E P  E+  ++   GKI +EL
Sbjct: 66  DLPIYQSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILREL 112


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 192 DIKVFQTFFQLHGKTFDYKIPMSTVLRLF 220
           DI +  T+F +HG   D  IP+   LR++
Sbjct: 141 DIWLPDTYFIMHGDFKDPLIPVHFALRIY 169


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 192 DIKVFQTFFQLHGKTFDYKIPMSTVLRLF 220
           DI +  T+F +HG   D  IP+   LR++
Sbjct: 141 DIWLPDTYFIMHGDFKDPLIPVHFALRIY 169


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 192 DIKVFQTFFQLHGKTFDYKIPMSTVLRLF 220
           DI +  T+F +HG   D  IP+   LR++
Sbjct: 192 DIWLPDTYFIMHGDFKDPLIPVHFALRIY 220


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 192 DIKVFQTFFQLHGKTFDYKIPMSTVLRLF 220
           DI +  T+F +HG   D  IP+   LR++
Sbjct: 141 DIWLPDTYFIMHGDFKDPLIPVHFALRIY 169


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 4   QNIIFKNSKTGKVEQIS 20
           +NI+F +  TGKVE I+
Sbjct: 813 ENILFLDLSTGKVEMIT 829


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,478
Number of Sequences: 429
Number of extensions: 6894
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 700
length of database: 140,377
effective HSP length: 62
effective length of query: 638
effective length of database: 113,779
effective search space: 72591002
effective search space used: 72591002
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)