GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005287-TA|BGIBMGA005287-PA|IPR008977|PHM/PNGase F Fold,
IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold shock protein,
IPR000323|Copper type II, ascorbate-dependent monooxygenase, core,
IPR002059|Cold-shock protein, DNA-binding,
IPR000945|Dopamine-beta-monooxygenase
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   3.0  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    27   5.3  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   7.0  
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy...    26   7.0  

>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 196 RKDWVDSSGIVLYITGRKRTYDAAIMELGLEYTDKMAIPGEQ---KAFPLTGYCIPQCTG 252
           R + +  + I L  +  K T   +  EL        +I  +    +A   TGY     T 
Sbjct: 187 RDEKITKAKIALQASRAKSTESTSSPELSHSLDSSKSIASDMPIHRASHTTGYAAASLTS 246

Query: 253 VTFMIIYRSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLH 298
            +F  + ++ERA+    +     T  + KG+  +    G  +I LH
Sbjct: 247 TSFTPVTKNERAIIAEEDYMLNHTRIKHKGYARIVTNHGEINIELH 292


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 90  LPEFVTSKVHHIVQFESTITPGNEGLVHHMEVFYCDEDPHKEMPAYEGNCFAAERPAIT 148
           +PEF  + + +++     ITP +EG + H+         + E P ++     AE P  T
Sbjct: 164 IPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRIS---YMEKPGFKLEFEFAENPFFT 219


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 126 EDPHKEMPAYEGNCFAAERPAITKSCSKVKAAWAMG 161
           E PH   PA+    +A    A+  +  +V+  WA+G
Sbjct: 223 EKPHLRKPAFTSLLYAIYASALLATPVEVQKTWALG 258


>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 133

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 137 GNCFAAERPAITKSCS 152
           GNC  AER AITK+ S
Sbjct: 53  GNCICAERVAITKAVS 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,461
Number of Sequences: 5004
Number of extensions: 79061
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 4
length of query: 351
length of database: 2,362,478
effective HSP length: 73
effective length of query: 278
effective length of database: 1,997,186
effective search space: 555217708
effective search space used: 555217708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)