GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005287-TA|BGIBMGA005287-PA|IPR008977|PHM/PNGase F Fold,
IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold shock protein,
IPR000323|Copper type II, ascorbate-dependent monooxygenase, core,
IPR002059|Cold-shock protein, DNA-binding,
IPR000945|Dopamine-beta-monooxygenase
         (351 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 166 TYPKEAGLPLGGPKANK 182
           TY + AGL   GPK NK
Sbjct: 421 TYGRNAGLRYRGPKQNK 437


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 222 ELGLEYTDKMAIPGEQKAFPLTGYCIP 248
           E  L YT+KM+  G++ A P  GY  P
Sbjct: 95  EANLGYTNKMSTRGKRPASP--GYVQP 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,857
Number of Sequences: 429
Number of extensions: 5522
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 351
length of database: 140,377
effective HSP length: 58
effective length of query: 293
effective length of database: 115,495
effective search space: 33840035
effective search space used: 33840035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)