Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005286-TA|BGIBMGA005286-PA|IPR010280|(Uracil-5)-
methyltransferase, IPR007848|Methyltransferase small
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 67 7e-12
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 7e-04
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 37 0.009
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 36 0.011
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.026
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 31 0.32
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 31 0.43
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 30 0.75
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.75
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 30 0.98
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 1.3
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 29 1.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 29 1.7
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 29 1.7
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 29 2.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 2.3
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 3.0
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 28 4.0
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 27 5.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 5.3
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 27 6.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 6.9
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 27 6.9
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 9.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 9.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 9.2
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 9.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 9.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 9.2
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 66.9 bits (156), Expect = 7e-12
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 383 IDICCGTGTIGLCFAKHCGKVLGLELVPEAVKDAKANAELNEIENSEFYTGKAEDILPSV 442
+D CG+G + +K V+G+E+ ++V+ A+ NA+ N + N+ F G+AE I S+
Sbjct: 380 VDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSSI 439
Query: 443 LARATGDDVIAIVDPPRAGLHMRAVTQLRNSRRVRRVLYVSCRPAAALKNWVDLARPSSK 502
++ ++DPPR G + QL R++Y+SC + D+ S+
Sbjct: 440 --ETPPNETAMVIDPPRKGCDQSFLNQLLEYSPY-RIVYISCNVHTQAR---DVGFLLSQ 493
Query: 503 TLRGAPFRPRRALPLDMFPHTDHIELAL 530
+G ++ D+FP + H+E L
Sbjct: 494 E-KGRSYKIDEIRGFDLFPQSHHVESIL 520
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 80 FACFQNEEERVKAIETLHGYEWKGKTLIAEIAKPAPDPLVKKRKQEEN-NGQ 130
F F N+E+ KAIETL+G + ++ + A+P + +K RK+ +N NG+
Sbjct: 93 FVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGE 144
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 73 KNGSHWLFACFQNEEERVKAIETLHGYEWKGKTLIAEIAKPAPDPLVKKRKQEEN 127
+ G + F F N E++ +AIE ++G + TL+ + A D + ++ EN
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNEN 309
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 36.7 bits (81), Expect = 0.009
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 373 LSEVKEDSTVIDICCGTGTIGLCFAKHC--GKVLGLELVPEAVKDAKANAELNEIENSEF 430
L VK+ ++D+ CG GTI + F K+ G+V+G+E E + A+ E E
Sbjct: 35 LKYVKKTDRILDVGCGPGTITVGFPKYVPEGEVIGVEPSQELLDKAEEALRKEETLKKE- 93
Query: 431 YTGKAEDILPSVLARATGDDVIAIVDPPRAGLHMR-AVTQLRNSRRVRRV-LYVSCRPAA 488
L S+ D+ IV+ + +H++ V L +RV + YV C+ A
Sbjct: 94 KINNCSFRLGSIYKLPFPDNTFDIVNTHQVLVHLQDPVAALVELKRVTKPGGYVCCKEAD 153
Query: 489 AL 490
L
Sbjct: 154 LL 155
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 36.3 bits (80), Expect = 0.011
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 382 VIDICCGTGTIGLCFAKHCGKVLGLELVPEAVKDAKANAELNEIENS--EFYTGKAE-DI 438
++DI CG G + A+ V ++ P A++ AK +A L+ + N E+ G E
Sbjct: 81 ILDIGCGGGILSESMARLGASVTAVDASPMAIEVAKKHASLDPVLNGRLEYIHGSVEGSQ 140
Query: 439 LPSVLARATGDDVIAIVDPPR 459
LP+ T +V+ V+ PR
Sbjct: 141 LPTTFDVVTCMEVLEHVEQPR 161
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.1 bits (77), Expect = 0.026
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 80 FACFQNEEERVKAIETLHGYEWKGKTLIAEIAKPAPDPLVKKRKQEENNGQLKLKDKEIK 139
F F N E +A++ L GY GK ++ + +K D +V++ EE + + KD++ +
Sbjct: 72 FVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSKSDIIVQRESPEEI--ETRKKDRKNR 129
Query: 140 HILMK 144
++K
Sbjct: 130 REMLK 134
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 356 FQINTAGAEILYQKAIELSEVKEDSTVIDICCGTGTIGLCFAKHCGKVLGLELVPEAVKD 415
+Q N + L + ++ + ++D+ CG G + C +V+G++ P+ +K
Sbjct: 11 YQRNASFVPKLTKDIVKRINLSSSDELLDLGCGDGVLTNELVSQCRRVVGIDASPDMIKA 70
Query: 416 AK 417
A+
Sbjct: 71 AR 72
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 31.1 bits (67), Expect = 0.43
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 381 TVIDICCGTGTIGLCFAKHCGKVLGLELVPEAVKDAKANAELNEI-ENSEFYTGKAEDI 438
TV+D+ CGTG + + AK K + + ++ A +NA N + + F GK EDI
Sbjct: 258 TVLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQMAISNAFENGLADQITFIRGKIEDI 316
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 30.3 bits (65), Expect = 0.75
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 370 AIELSEVKEDSTVIDICCGTGTIGLC---FAKHCG--KVLGLELVPEAVKDAKANAELNE 424
A L EVK+ TV G G IGL +A+ G KV+G+E+VPE ++ A+
Sbjct: 213 ACTLGEVKKGDTVA--IWGMGPIGLYAGRWAQILGASKVIGIEVVPERIELARQKFGFTV 270
Query: 425 IENSE 429
I+ +E
Sbjct: 271 IDRNE 275
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 30.3 bits (65), Expect = 0.75
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 80 FACFQNEEERVKAIETLHGYEWKGKTLIAEIAKPAPD------PLVKKRKQEENNGQLKL 133
FA F EE ++TL+GYE G+ L E + P KKR+ EE + +
Sbjct: 247 FANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKVEKAKKRQAEERRRKQQY 306
Query: 134 KDKEI 138
K E+
Sbjct: 307 KMFEV 311
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 29.9 bits (64), Expect = 0.98
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 379 DSTVIDICCGTGTIGLCFAKHCGK-VLGLELVPEAVKDAKANAELNEI-ENSEFYTGKAE 436
D V+D+ CGTG + + A+ K V G+++ E + A E+N++ + GK E
Sbjct: 55 DKIVLDVGCGTGILSMFCARAGAKHVYGVDM-SEIIHKAVQIVEVNKLSDRITLIQGKME 113
Query: 437 DI 438
+I
Sbjct: 114 EI 115
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.5 bits (63), Expect = 1.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 85 NEEERVKAIETLHGY--EWKGKTLIAEIAKPAPDPLVKKRKQEENNGQLKLKDKEIKHIL 142
NEEE + I+ LH + + L ++ K PD + K K + QLKL + KH +
Sbjct: 1074 NEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGM 1133
Query: 143 MKFDNEVWKMD-KSNRSVIEANRKIYN 168
+ D E K K ++ + +KI N
Sbjct: 1134 LFVDGEKGKTGIKGLQNTVMQLKKICN 1160
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 377 KEDSTVIDICCGTGTIGLCFAKHCGKVLGLELVPEAV 413
K +++D CGTG I +C +++G+++ + V
Sbjct: 76 KSGMSILDFACGTGLISQHLFPYCKQIVGIDVSQDMV 112
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 86 EEERVKAIETLHGYEWKGKTLIAEIAKPAPDPLVKKRKQEENNGQLKLKDKEIKHILMKF 145
E+E V A +G W K + + A P+P +KK E N ++K+K+ +
Sbjct: 535 EKENVSAPAKFNGSFWS-KFIHSSSASPSPSIDMKKESLELKNDTTEIKEKKNSKSRVVG 593
Query: 146 DNEVWKMDKSNRSVIEANRKI 166
+ E K D+ N + E +I
Sbjct: 594 NTENSK-DEFNNPLFETEEQI 613
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/46 (23%), Positives = 28/46 (60%)
Query: 365 ILYQKAIELSEVKEDSTVIDICCGTGTIGLCFAKHCGKVLGLELVP 410
++ Q ++ +++K+ TV+++ GTG + + + KV+ +E+ P
Sbjct: 37 LVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKVIAVEMDP 82
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 368 QKAIELSEVKEDSTVIDICCGTGTIGLCFAKHCGKVLGLELVPEAVKDAKANAEL 422
++A+EL + + S ++DI CG+G V+G+++ P + A + E+
Sbjct: 37 ERALELLDAEGPSFILDIGCGSGISTQIGESQGHVVVGMDISPSMLSVALESQEI 91
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 83 FQNEEERVKAIETLHGYEWKGKTL---IAEIAKPAP 115
F+NE + +IE L+GY + G+ L A A P P
Sbjct: 327 FENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLP 362
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 341 DTILGRQFRISPEAFFQINTAGAE---ILYQKAIELSEVKEDSTVIDICCGTG 390
D L + +PEAF Q+ GAE L I++ +E+S ID C G
Sbjct: 281 DPALAQAITQNPEAFLQLLAEGAEGESALPSGGIQIQITQEESESIDRLCQLG 333
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 67 SKIKRPKNGSHWLFACFQNEEERVKAIETLHGYEWKGKTLIAEIAKP 113
+K K + F + + + +KA + L GY W L E +KP
Sbjct: 234 AKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 381 TVIDICCGTGTI--GLCFAKHCGKVLGLELVPEAVKDAKANAELNEIENSEFYTGKAEDI 438
T++++ CG G + L + K+ + P A+ K ++ NE F ED
Sbjct: 58 TILEVGCGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDS 117
Query: 439 LPSVLARATGDDVIAI 454
L VL A D + AI
Sbjct: 118 LLEVLGSACIDTLTAI 133
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 396 FAKHCGKVLGLELVPEAVKDAKANAELNEIENSEFYTGKAEDI 438
F K CG ++ + ++ + KD K A++ E SE K D+
Sbjct: 609 FFKDCGNIIRIFILEDNQKDVKV-AQIEFSETSEVLAAKTRDL 650
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 351 SPEAFFQINTAGAEILYQKAI-ELSEVKEDS-TVIDICCGTGTIGLCFAKHC---GKVLG 405
SP++ T A ++ A+ EL V + + +DI G+G + A+ G V G
Sbjct: 49 SPQSIGYGVTISAPHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKG 108
Query: 406 LELVPEAVKDAKANAELNEIENSE 429
+E +P+ V+ +K N L +I + E
Sbjct: 109 IEHIPQLVETSKKNL-LKDINHDE 131
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 421 ELNEIENSEFYTGKAEDILPSVLARATGDDVIAIVDPPRAGLHMRAVTQLR 471
E E +EF TG + ++ + A D ++A+V H A TQ R
Sbjct: 558 ETKEFSENEFTTGWLDRLIAQKVTSARPDKMLAVVCGALVRAHATADTQYR 608
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 281 YPQNLTESEIEKIKNDLIEHCSSKEVDCGIKSLYFELITKRRVGEEPTKPT 331
Y + + +I+ I+N++++ + V +K L+++ + R +PTKP+
Sbjct: 171 YKKLILARDIKGIENEIVDAAQEERV---LKRLHYKALNYGRDAADPTKPS 218
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 9.2
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 94 ETLHGYEW-------KGKTLIAEIAKPAPDPLVKKRKQEENNGQLKLKDKEIKHILMKFD 146
E+LH EW G TLI DP + K + QL+ +K K+IL
Sbjct: 442 ESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITKYILKLLS 501
Query: 147 NEVWKMDKSNRSVIEANRKIYNGLSFELKPIEKSPVLDGYRNK 189
V +++ N VI + K + + + IE S V+ G R +
Sbjct: 502 KTVLEVE-VNIEVIH-HEKAKHLIIEMIDYIEPSLVVMGSRGR 542
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 535 EQTKEDTEGSSETVEDSSAAPDVENKDNN 563
E+T+E EGSSE+ DS ++ D ++ +
Sbjct: 192 EKTEEKKEGSSESSSDSESSSDSSSESGD 220
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 263 LTVRQSTSNGDVMLIASMYPQNLTESEIEKIKND 296
L ++ S + +V I S+ N T SE+E + ND
Sbjct: 533 LRLQDSDVDDEVATIRSLKQNNATNSEVETVTND 566
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 9.2
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 64 LNTSKIKRPKNGSHWLFA--CFQNEEERVKAIETLHGYEWKGKTLIAEIAKPAPDPLVKK 121
L+ K K + S LFA F+N+ AI +L+G ++G TL E +V++
Sbjct: 52 LSRKKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTH-----IVER 106
Query: 122 RKQEENNGQLKLKDKEIKHILMKFDNEVWKMDKSNRSVIEANR 164
K + NG ++ + ++F +++ K K R + R
Sbjct: 107 YKNKLENGVDQIHHSNNEKAKIRF-SKIEKYTKETRPTVSEVR 148
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 VDGQASSLLSEEYAYLDRG 31
+D +SSLLSE+Y LD+G
Sbjct: 277 IDPNSSSLLSEKYITLDKG 295
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 202 LPTVGFRLGSYVTGTVAVAPIEMLIHIPERTKQAVLVFQD-FVRKSGL 248
L + GFR+ ++ + + + P++ LIH+ T ++ + FQ FV +S L
Sbjct: 644 LSSKGFRIIAFASKNL-ITPLQELIHLSRSTLESNVTFQGLFVLESPL 690
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,014
Number of Sequences: 5004
Number of extensions: 115239
Number of successful extensions: 348
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 32
length of query: 563
length of database: 2,362,478
effective HSP length: 76
effective length of query: 487
effective length of database: 1,982,174
effective search space: 965318738
effective search space used: 965318738
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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