GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005286-TA|BGIBMGA005286-PA|IPR010280|(Uracil-5)-
methyltransferase, IPR007848|Methyltransferase small
         (563 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   8.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 127 NNGQLKLKDKEIKHILMKFDNEVWKMDKSNRSVIEANRK 165
           +NG   + D    HI  KF +   K D+ N    E N K
Sbjct: 354 SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPK 392


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 261 RYLTVRQS--TSNGDVMLIASMYPQNLTESEIEKIKNDLIEHCSSKEVDCGIKSLYFELI 318
           RY T + S  T+     +IA   P  LT +  ++  N  ++   +  +DC  +S Y+EL 
Sbjct: 921 RYSTTKSSAVTATNASSMIA---PVALTAATCDQ--NKAVKKHITTTIDCSTQSEYYELE 975

Query: 319 TKRRVGEEP 327
            K +   +P
Sbjct: 976 VKDQKNGKP 984


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 203 PTVGFRLGSYVTGTVAVAPIEMLIHIPE 230
           P  G   GSY + ++ VA +  L HIP+
Sbjct: 69  PIFGVIGGSYSSVSLQVANLLRLFHIPQ 96


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 203 PTVGFRLGSYVTGTVAVAPIEMLIHIPE 230
           P  G   GSY + ++ VA +  L HIP+
Sbjct: 159 PIFGVIGGSYSSVSLQVANLLRLFHIPQ 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,272
Number of Sequences: 429
Number of extensions: 6749
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 563
length of database: 140,377
effective HSP length: 61
effective length of query: 502
effective length of database: 114,208
effective search space: 57332416
effective search space used: 57332416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)