GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005285-TA|BGIBMGA005285-PA|IPR013026|Tetratricopeptide
region, IPR001179|Peptidylprolyl isomerase, FKBP-type,
IPR001440|Tetratricopeptide TPR_1
         (324 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 240  VIEHCNTVLEFDKDNEKALYRRAKAHIGAWNPDRAEEDLR 279
            +++  N   E + D E   Y R  A I  WN  R  E LR
Sbjct: 1162 IVQAENAYPEVELDRELRPYLRTAAAILTWNEKRFWERLR 1201


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 163 QER-IDLIPTLKEKGNSLY 180
           QER  +L+P L+ KGN +Y
Sbjct: 465 QERESELVPYLENKGNGVY 483


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 263 KAHIGAWNPDRAEEDL 278
           KAH+G+W     E+D+
Sbjct: 600 KAHLGSWVKKPIEQDM 615


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 57 LVLGHKFKLEVWETVVKMMAIGEVSSFVVKK 87
          L++   F  E WE + K  A+     F+V++
Sbjct: 11 LLVVKTFDSETWEAIKKDAAVNMEGQFLVRQ 41


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 85   VKKELVYAYPFVSKTLRELGQS 106
            V  EL+Y Y    KTL E+ Q+
Sbjct: 1005 VTPELIYEYQIHPKTLNEVLQA 1026


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 57 LVLGHKFKLEVWETVVKMMAIGEVSSFVVKK 87
          L++   F  E WE + K  A+     F+V++
Sbjct: 11 LLVVKTFDSETWEAIKKDAAVNMEGQFLVRQ 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,265
Number of Sequences: 429
Number of extensions: 4527
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 140,377
effective HSP length: 58
effective length of query: 266
effective length of database: 115,495
effective search space: 30721670
effective search space used: 30721670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)