GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005284-TA|BGIBMGA005284-PA|IPR010993|Sterile alpha motif
homology
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.49 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.0  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 27  ENFREQRIDGAGLPLLTEDHLTGMLQMKLGPALKMKAVLARRLEPCAQCQANAPIASAQT 86
           + F  Q++  +  P   +   T      L  +L   AV A  +   AQ Q N+P      
Sbjct: 11  QQFHHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVN-YAQ-QHNSP------ 62

Query: 87  SPTSIASKVNGTSVKSEPRSNTTS 110
           SPT  + + +G+S  + P + TTS
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTS 86


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 36  GAGLPL-LTEDHLTGMLQMKLGPALKMKAVLARRLEPCAQCQANAP 80
           GAG+   L++  L  M + K    L+M   L   LE C Q + +AP
Sbjct: 488 GAGIVYHLSKAELDKMDKEKKLEDLEMGTPLENILESCQQDETHAP 533


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 35  DGAGLPLLTEDHLTGMLQMKLGPALKMKAVLARR 68
           D   LP +  D +  M+  K    ++ K   ARR
Sbjct: 243 DQMSLPQMLADKIGKMVNQKFSELIQSKPQHARR 276


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.126    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,247
Number of Sequences: 429
Number of extensions: 975
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)