GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005283-TA|BGIBMGA005283-PA|undefined
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    28   0.39 
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    28   0.51 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   0.68 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   2.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   4.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   4.8  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    24   6.3  

>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 39  KQLPGNWTCPFPPGEYHFKNLIIHLENFPFHIPFTWSSIIVRT 81
           +++P  ++ P P  E   K L ++L+  P    F W+ ++  T
Sbjct: 247 RRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNAT 289


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 37  YAKQLPGNWTCPFPPGEYHFKNLII 61
           YAKQL  NW     PG++ F++L I
Sbjct: 235 YAKQLVDNWVEKTDPGKHVFEDLAI 259


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 21  YKLCDFLYKEPFFGQMYAKQLPGNWTCP-FPPGEYHFKNLIIHL 63
           YKLC   Y  PF  Q     L  +++ P FPP  +  KN+II L
Sbjct: 240 YKLC--YYTTPFETQGPNAILTASYSFPPFPPYSHSLKNVIIAL 281


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 35  QMYAKQLPGNWTC-PFPPGEYHFKNLIIHLENFPFHIPFTWSSIIVRTRVDVQGFLMPSN 93
           + Y K++ G   C  FPP EY  K+ I             WS +I RT  D  G++ P N
Sbjct: 489 EFYGKRVIGVRMCWDFPPVEYEDKDEI-------------WSPVINRTDKDWLGYVWPPN 535


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 99  WKTYVSVTQKMKKANSSNKVENSTKS 124
           +K + ++ +     NSSN +EN+TKS
Sbjct: 875 YKQHGNIMKVASPENSSNSMENATKS 900


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 60  IIHLENFPFHIPFTWSSIIVRTRVDVQGFLMPSNEEVFRWK 100
           +++L + P H  ++ SSI+ RT V  Q  L+  N +   WK
Sbjct: 324 LLYLISRPLHNMYSLSSILSRTTVLSQ--LLGFNHDCTEWK 362


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 18/57 (31%), Positives = 21/57 (36%)

Query: 61  IHLENFPFHIPFTWSSIIVRTRVDVQGFLMPSNEEVFRWKTYVSVTQKMKKANSSNK 117
           IH +N P    F   SI       V   L P        K YVS   + KK N + K
Sbjct: 349 IHYKNTPKDPNFLKISIECGKIEQVSESLFPRRFREMYEKAYVSKLSEQKKGNGTQK 405


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,028
Number of Sequences: 5004
Number of extensions: 29930
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 7
length of query: 126
length of database: 2,362,478
effective HSP length: 65
effective length of query: 61
effective length of database: 2,037,218
effective search space: 124270298
effective search space used: 124270298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)