Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005282-TA|BGIBMGA005282-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 175 4e-45
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 82 8e-17
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 1e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 54 2e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 53 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 4e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 53 5e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 52 7e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 1e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 48 1e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 2e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 45 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 44 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 6e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 7e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 5e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 7e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 7e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.003
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.020
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.061
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.061
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 32 0.080
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.11
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.18
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.24
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.75
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 7.0
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 175 bits (427), Expect = 4e-45
Identities = 80/135 (59%), Positives = 109/135 (80%), Gaps = 2/135 (1%)
Query: 3 EEDADYAIKVMNMIKLYGKPVRVNKASAHQK-NLDVGANVFIGNLDPEVDEKLLYDTFSA 61
E+D +YA +++N +KL+GKP+RVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA
Sbjct: 62 EQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSA 121
Query: 62 FGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDV 121
G +++ P+V RD E G SK + F+++ SFE +DAAIEAMNNQ+L N+PI+VSYAFK++
Sbjct: 122 LGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREG 180
Query: 122 KGERHGSAAERLLAA 136
KGERHG AER LAA
Sbjct: 181 KGERHGDIAERKLAA 195
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 39 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 98
A +++GNLD +V + +L++ G ++ + RD + F F F + + A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNI-HIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 99 EAMNNQYLCNRPISVSYA 116
+ +N L +PI V+ A
Sbjct: 70 QILNQVKLFGKPIRVNRA 87
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 82.2 bits (194), Expect = 8e-17
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 4 EDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEKLLYDTFSAF 62
ED + A+ +N + G+P R+ + +G NVFI NLDP +D K L+DTFSAF
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAF 191
Query: 63 GVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSY 115
G IL KV D E GN+K + F++F S E+++AAIE +N L ++ + V +
Sbjct: 192 GKILSC-KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 68.9 bits (161), Expect = 8e-13
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 24 RVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAF 83
R + + N G N+FI NL EVD++ L FSAFG I K+M D E G SK F
Sbjct: 349 RYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSA-KIMTD-EQGKSKGF 406
Query: 84 AFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVKG---ERHGSAAERLLAAQNPL 140
F+ + + E ++ A+ MN + L +P+ V+ A +K+V+ E A + Q
Sbjct: 407 GFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVA 466
Query: 141 SHADRPHQLFADAPPTLMGP 160
+ A P + P + GP
Sbjct: 467 AAAGIPAVQYGATGPLIYGP 486
Score = 55.6 bits (128), Expect = 8e-09
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 22 PVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK 81
P + + A++++G LDP V E +L++ F++ G + +V RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASI-RVCRDAVTRRSL 121
Query: 82 AFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 116
+A++NF + E + A++ +N + RP + ++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
Score = 51.2 bits (117), Expect = 2e-07
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 4 EDADYAIKVMNMIKLYGKPVRV-NKASAHQKNLDVGA------NVFIGNLDPEVDEKLLY 56
E A+ AI+ +N + L K V V + S ++ V A NV+I NLD E+ E+
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 57 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 116
D F FG I +++D + + F F+N+A+ E + A++ +N++ + + V A
Sbjct: 279 DLFGQFGEITSL-SLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Query: 117 FKKDVKGE 124
KK + E
Sbjct: 337 QKKHEREE 344
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 39 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 98
A V +GNL P V E LLY+ F FG I+ + E +++AF+ F E + A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV--ALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 99 EAMNNQYLCNRPISVSYA 116
E MN LC+R I VS A
Sbjct: 64 ENMNYSILCDRCIRVSPA 81
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 34 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 93
++ G VF+GN+ +V E+ + + F+ G + +T K++ DPETG+ K + F F E
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPV-KTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 94 SDAAIEAMNNQYLCNRPISVSY 115
+ A+ +NN L R I V +
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEF 82
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 53.2 bits (122), Expect = 4e-08
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 28 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 87
+S HQ D A ++IGNLD +++E + FS FG + ++RD ETG SK FAF+
Sbjct: 21 SSWHQDYSD-SAYIYIGNLDFDLNEDDILCVFSEFGEPVDI-NLVRDKETGKSKGFAFLK 78
Query: 88 FASFEASDAAIEAMNNQYLCNRPISVSY 115
+ ++ A++ M N L +R + V +
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 29 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 88
SA + + ++G ++F+ + + E L FS FG + ++MR+P T S+ F F++F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHV-RIMREPVTKASRGFGFLSF 149
Query: 89 ASFEASDAAIEAMNNQYLCNRPISVSYA 116
++ E + +AI+ +N+Q R ++V A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 5e-08
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+F+GNL +V+++ LY FS + +++T KV+RD E G ++ F F++F + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKT-KVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 101 MNNQYLCNRPISVSYAFKKDVK 122
N +Y+ +RP+ +S A DVK
Sbjct: 90 KNGKYIGSRPVKLSRA-TSDVK 110
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 99
++F+G+L P V+E +Y F++ ++ K+M DP+T S+ + F+ F +A+
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 100 AMNNQYLCNRPISVSYAFKK 119
M Q +RPI V A K
Sbjct: 247 EMQGQICGDRPIRVGLATPK 266
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
VF+GNL E L F G I Q+ ++ DP++G K F ++ F+ +++ +E
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDI-QSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE- 425
Query: 101 MNNQYLCNRPISVSYAFKKDVKGERHG 127
MN ++ RP + ++ + G R G
Sbjct: 426 MNGHFIAGRPCRLDFSTPRTGGGSRGG 452
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 21 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 80
+P ++ K S VF+G L VD++ L F +G I+ +V+ D ++G S
Sbjct: 248 RPAKITKPSQDSNET---CTVFVGRLSWNVDDQWLGQEFEEYGTIVGA-RVIMDGQSGRS 303
Query: 81 KAFAFINFASFEASDAAIEAMNNQYLCNRPISV 113
K + +++F + EA+ AA+ A + + R +++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 99
++F+G+L P ++ L+ TF + + K++ DP TG S+ + F+ F+S + A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 100 AMNNQYLC-NRPISVSYAFKK 119
M YLC RP+ +S A K
Sbjct: 243 HMQG-YLCQGRPLRISVASPK 262
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK--AFAFINFASFEASDAAI 98
+++G+L+P +D + +++ + KVMR + + ++ F+ F+S A++ A+
Sbjct: 87 LWMGDLEPWMDATFIQQLWASLNEPVNV-KVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 99 EAMNN 103
NN
Sbjct: 146 MKYNN 150
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 37 VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDA 96
+ VF+G L + EK L F FG IL ++ P K F+ ++ A++
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILN----IKIP---FGKGCGFVQYSEKSAAEK 347
Query: 97 AIEAM 101
AI M
Sbjct: 348 AINTM 352
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 25 VNKASAHQKNLDVGANV-FIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAF 83
+ K + KNL V ++G L EK + FS FG +L+ ++ R+ +TG+SK +
Sbjct: 90 IKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRL-RMSRNRKTGSSKHY 148
Query: 84 AFINFASFEASDAAIEAMNNQYL 106
AFI F S + ++ E M+N L
Sbjct: 149 AFIEFESLDVANVVAETMHNYLL 171
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+++GNL ++ L D F+ G +++ ++ +P TG SK F + F + + ++IE
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRA-RIAYEP-TGRSKGFGVVQFENENDAASSIEK 339
Query: 101 MNNQYLCNRPISVSYA 116
+N RP+ +SYA
Sbjct: 340 LNGYRYGGRPLQLSYA 355
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+F+ L+P ++ L FS FG I+ +V+RD ETG+S +AFI F + E+ + A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISC-QVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 101 MNNQYLCNRPISVSYA 116
M N + + I V ++
Sbjct: 305 MQNVLIDDSRIHVDFS 320
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 42.7 bits (96), Expect = 6e-05
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 13 MNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVM 72
+N + +RV+ S H D VF+GNL E +E+ L+ F G I +++
Sbjct: 245 LNGTMFMDRHLRVDSVS-HPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSI-DYVRIV 302
Query: 73 RDPETGNSKAFAFINFASFEASDAAI 98
RDP+T K FA+I F D A+
Sbjct: 303 RDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 38 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 97
G + + + PE E+ + D F+ FG + + + D TG K +A I +A+ E + A
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPV-KNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
Query: 98 IEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADR 145
++ N L + + V +AF + + S + R + + H DR
Sbjct: 68 VDE-KNLSLLDEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
VF+ L + + LYD F G + + +++RD +G SK A++ F ++ AAI A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPV-RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-A 299
Query: 101 MNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNP 139
++ + L P+ V + + R + R +A+ P
Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIP 338
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 35 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEAS 94
++ + +F+ NL + + L + FS G I V+ +PETG ++ + F+ F+ E +
Sbjct: 1 MNSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAV-VVTNPETGENRGYGFVTFSMLEDA 59
Query: 95 DAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAP 154
A + + N+ L R + + +A + +R ++ A + + +RP + + P
Sbjct: 60 QRAAKELKNKKLHGRILRLDFATPR----KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLP 115
Query: 155 PTLMGP 160
++ P
Sbjct: 116 WSIKKP 121
Score = 34.3 bits (75), Expect = 0.020
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 4 EDADYAIKVMNMIKLYGKPVRVNKASAHQKN-LDVGAN--------------VFIGNLDP 48
EDA A K + KL+G+ +R++ A+ +++ +D N + I NL
Sbjct: 57 EDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPW 116
Query: 49 EVDE-KLLYDTFSAFGVILQTPKVMRDPETGNSK--AFAFINFASFEASDAAIEAMNNQY 105
+ + + L FS FG + + ++ P G + FAF+ +A++ A+ ++N
Sbjct: 117 SIKKPQHLEPHFSKFGKVRE----IKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTE 172
Query: 106 LCNRPISVSYAFKKD 120
+ RPI+V +A KD
Sbjct: 173 IDGRPIAVDWAVSKD 187
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 88
VF+ NL E E+ LY+ F FG L K+++DP T S FI F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGP-LAYAKLVKDPATDRSLGRGFIKF 325
Score = 26.6 bits (56), Expect = 4.0
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 63 GVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVK 122
GV+ Q G SK F F+ F S + + A+ +N R I+V KK +
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLN-----GREITV----KKIID 571
Query: 123 GERHGSAAERLLAAQNP-LSHADRPHQLFAD 152
E + ++ Q P + + DRP +L +
Sbjct: 572 AEIEWARKHKIPEPQLPNIDYNDRPRRLIVE 602
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 88
+FIG L+ E + L D F FG +L VMRD TG S+ F F+ F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCT-VMRDSTTGRSRGFGFLTF 211
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 18 LYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPET 77
L GK + +A ++ + A +F+G + + E+ + F+ FG +L +M D +T
Sbjct: 227 LDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT-LMMDKDT 284
Query: 78 GNSKAFAFINFASFEASDAAIEA-MNNQYLC--NRPISVSYAFKKDVKGERH 126
G + F F+ + +++A+EA M+ Y+ +P+ V A K + H
Sbjct: 285 GRPRGFGFVTY----ENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSH 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 29 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 88
S ++ D A + + NL + E+ L D F FG I Q + +D ETG +K FAF+
Sbjct: 192 SMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGI-QRVYLAKDKETGRAKGFAFV-- 248
Query: 89 ASFEASDAAIEA 100
S+ D AI+A
Sbjct: 249 -SYYDRDCAIKA 259
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 28 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 87
AS + + +F+GNLD E + L + F G I + ++M +TG K F F++
Sbjct: 217 ASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV-RLMTFEDTGKCKGFGFVD 275
Query: 88 FASFEASDAAIEAMNNQY 105
F + A+E +N +
Sbjct: 276 FPDIDTCMKAMELGHNSW 293
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 7e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 40 NVFIGNLDPEV--DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFA-SFEASDA 96
N+F+ NLD + + + L + FS FG I ++ + P T SK + F++F+ FEA
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRI-KSCTLASYPSTEISKGYGFVSFSHPFEAVQ- 477
Query: 97 AIEAMNNQYLCNRPISVSYAFKKDVKGER 125
AI +N + + V+YA K++ + +R
Sbjct: 478 AINTLNGVLFGKKRLFVNYAEKREDRKKR 506
Score = 32.3 bits (70), Expect = 0.080
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVI----LQTPKVMRDPETGNSKAFAFINFASFEASD 95
++++GNL L++ F FG + + K + ++ + FAFI F + ++D
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 96 AAIEAMNNQYLCNRPISVSY 115
AI ++N + V Y
Sbjct: 81 NAIASLNGSSFQGNTLKVEY 100
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
V++GN+ E+ E+ + D F G + V+ DPE+G K + F + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 101 MNNQYLCNRPISVSY 115
+NN R + V +
Sbjct: 66 LNNYDAGTRRLRVDF 80
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+ + L PE+ E+ + A G + T ++R+ ET S+ FAF F S + S +EA
Sbjct: 73 IILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEA 132
Query: 101 MNNQYLCNRPISVSYAFKKDVKGERHG 127
N L I VS F + + + G
Sbjct: 133 -NFPTLVIDGIDVSVRFSRAAREQIEG 158
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 99
+V++GN+D V + L F++ G + + ++ D TG+ K FA+I F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVT-ILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 100 AMNNQYLCNRPISVS 114
+N L RP+ V+
Sbjct: 114 LLNGSMLHERPLKVT 128
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 37.1 bits (82), Expect = 0.003
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+++GNL V + TFSA+G + + + K AF+NF S E + +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRML-------SHKHSAFLNFDSVETAKHVLEE 641
Query: 101 MNNQ--YLCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFAD 152
+N + + + P+ +S+A E SA + L A + +S +++ D
Sbjct: 642 LNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDD 695
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 40 NVFIGNLDP-EVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 98
++F+G LDP LL D FS +G ++ K++ + AFAF+ F S +A+ AA+
Sbjct: 366 SIFVGQLDPVNCTHYLLVDLFSKYGKVIDC-KIIHQSK---KPAFAFLRFDSQQAAYAAV 421
Query: 99 EAMNNQYLCNRPISVSY 115
+P+ V +
Sbjct: 422 CGKTRSPHQKKPLRVEF 438
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.020
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 38 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 97
G + I NL E +K + A+G L++ +V + + +++ FAF F + + A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQ-LRSVRVPKKFDR-SARGFAFAEFVTAREAANA 777
Query: 98 IEAMNNQYLCNRPISVSYAFKKDVKGERHGSAAERLLAAQN 138
+ A+ N +L R + + YA + +H A E++ N
Sbjct: 778 MRALKNTHLLGRHLVLQYASNATMDDMQH--AIEKMAKEAN 816
Score = 30.7 bits (66), Expect = 0.24
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 26 NKASAHQKNLDVGAN---VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKA 82
N S ++N+ + + +F+ NL E L F FG + Q + D +T N K
Sbjct: 307 NNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPI-DKKTNNPKG 365
Query: 83 FAFINFASFEASDA 96
FA+I+F +A DA
Sbjct: 366 FAYIDF--HDADDA 377
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.061
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 28 ASAHQKNLDVGA----NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS--- 80
ASA Q N VF+G L + + F G + + R G
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 81 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 116
AF+ F + E D AIE +N + L +R I V A
Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 29.1 bits (62), Expect = 0.75
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 76 ETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV-SYAFKKDVKGERH 126
E + F F++FA+ E AIE MN + + + + V S F++D + + +
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDEN 304
>SPBP16F5.06 |||ribosome biogenesis protein
Nop6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.061
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 35 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE 92
+++ +++G L ++ L FS FG + + + G + FA++NF + E
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.3 bits (70), Expect = 0.080
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 34 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 93
N +V + +FI NL ++ + +YD F +G + Q +R T ++ AF+ + + +
Sbjct: 7 NQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQ----IRLGNTVQTRGTAFVVYENVQD 62
Query: 94 SDAAIEAMNNQYLCNRPISVSY 115
+ A E ++ +R + V Y
Sbjct: 63 ARRACEKLSGYNFMDRYLVVHY 84
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 23 VRVNKASAHQKN--LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 80
V ++ + KN LD ++I NL + E + + FG +L +++++ G+S
Sbjct: 292 VSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSF-QLIKNIADGSS 350
Query: 81 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 116
K F F F + ++ AI ++ + + +A
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.1 bits (67), Expect = 0.18
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+F+ L + E + F+ +G I + +V+R+ TG S +AF+ F A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPI-ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 101 MNNQYLCNRPISVSYAFKKDVKG 123
L R I V + VKG
Sbjct: 161 SAGLMLNGRRIVVDVERGRTVKG 183
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.7 bits (66), Expect = 0.24
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 100
+FI N+DPEV E + F + I + +V+R + G S + AFI A+ A
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI--SARVLRCVD-GTSTSIAFIWLANESDIQNAQVE 131
Query: 101 MNNQYLCNRPISVSYAFKKD 120
M + R I V ++ K D
Sbjct: 132 MQGAFCLKRSILV-HSVKSD 150
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 34 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 65
N NVFIGNL EK + + F FG I
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF-------ASFEA 93
VF+ N+ P V + L F +FG + + +P TG S I+F + +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDL-DLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 94 SDAAIEAMNNQYLCNRPISV 113
+ A++ N +P+SV
Sbjct: 155 AKIAVQQANGLRFSGKPLSV 174
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 99
N++IGN D + + L + F FG I + R+ K AF+NF S ++ AI+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI-EYVNFFRE------KNCAFVNFTSLASAINAID 467
Query: 100 AMNNQ 104
+ +
Sbjct: 468 RIKQK 472
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 40 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 99
NVF+GNL + E + + FG I Q K++ + + AF++F + A+ A++
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQI-KIVTE------RNIAFVHFLNIAAAIKAVQ 259
Query: 100 AM 101
+
Sbjct: 260 EL 261
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 41 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK-AFAFINFASFEASDAAIE 99
+FIGN+ E+D+ + G + +V + NS +F F F S E A+E
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVA---DADNSMTSFGFAEFESNEQFSRALE 197
Query: 100 AMNN 103
A+N+
Sbjct: 198 ALND 201
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 38 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS-KAFAFINFASFEASDA 96
G +++ N+D +V+EK + F +G + + +R P+ N K F ++ + + ++
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQV----ESVRIPKRFNQHKGFGYVVMTTNQDAEN 811
Query: 97 AIEAMNNQYLCNRPISV 113
A+ A Q L NR ++V
Sbjct: 812 ALSAAGKQ-LGNRVLNV 827
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 32 QKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASF 91
Q N + +VF+ N+ PE + L S FG + + E K A+++F +
Sbjct: 308 QSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV-------KAIEFARRKGTAYVDFVNH 360
Query: 92 EASDAAI 98
E A+
Sbjct: 361 ECVQLAL 367
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,413
Number of Sequences: 5004
Number of extensions: 29575
Number of successful extensions: 142
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 62
length of query: 281
length of database: 2,362,478
effective HSP length: 72
effective length of query: 209
effective length of database: 2,002,190
effective search space: 418457710
effective search space used: 418457710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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