GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005281-TA|BGIBMGA005281-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    29   1.2  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   1.6  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    27   6.6  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   6.6  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   6.6  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    27   8.7  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 193 AALMWGKKFCDTN--QNTSLKDVIGNFLEYIQFHRIPANVLMREVHPL 238
           A L+WG +  D      T ++ V+ + +  I F + P+N ++  VHPL
Sbjct: 32  ANLVWGPEIVDKALLSGTPVERVVNDRINCIDFVKPPSNKVLFRVHPL 79


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 8   STFENKSGLAEDMKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFQKMLYQAPSP 67
           ST    +   ED + L +  EL +     G +  P  A+  V      +  + L + P+P
Sbjct: 637 STSSKSNVEMEDTRLLPASLELANTQ---GASNPPTSALPTVPVPLPSIITEFLDELPAP 693

Query: 68  QRKKEPGPRENKLRLFLKRSSEPLLNLQNA 97
           Q    P  +  KL   + +S  P + L+NA
Sbjct: 694 QVITGPRIQPTKLIDHIIKSDIPFIRLRNA 723


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 291 LFSSIKRAASKKFGDR-RSPTPKTREPRSKSDSIKHAALTRQVSETVGASGDATFERC 347
           +FSSI  A S   GD   + TPK   P    D +    LT Q  E + +  +   E+C
Sbjct: 163 IFSSITEAMSLNPGDLVLTGTPKGVGPVVPGDILSARLLTAQEQEIIPSKFEIKAEKC 220


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 11/180 (6%)

Query: 199 KKFCDTNQNTSLKDVIGNFLEYIQFHRIPANVLMREVHPLGL-VPYSIIMNALAYQANLP 257
           +K    NQ  S  + + N L   +   IP  +   +  PL L  PY +  +        P
Sbjct: 128 QKSTSPNQVCSYCEPLPNHLTKTKSCSIPPILNSSDRSPLSLPTPYPVQYSTQPVSLPQP 187

Query: 258 RPAPDPVXXXXXXXXXXXXXXXXXXXXXXEKFGLFSS--IKRAASKKFGDRRSPTPKTRE 315
             AP P                        + G  SS  +K + SK F    SP   T +
Sbjct: 188 IAAPAPPSAESSKSTISDEDVAWQLI----RLGALSSNSVKSSPSKSFVSISSPVQSTVK 243

Query: 316 PRSKSDSIKHAALTRQ---VSETVGASGDATFERCRPKKRDSDTEFPVRKSTSELSESFP 372
           P   S  +K   + ++     +   AS   + +R RP    + T      S + L+ + P
Sbjct: 244 PTKASGVVKSEKVEKRSLPPQDFGNASSSTSAKRRRPDHNHTST-LDASSSNTSLASTGP 302


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 14  SGLAEDMKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFQKMLYQAPSPQRKKEP 73
           S L +  K++A +PE C+V F+  D  + +   + +L  +S + ++        +++K  
Sbjct: 495 SELRQRFKYMAHLPEGCEVAFIECDWSK-IIPKEVLLTFKSEISKRR-------KQRKAQ 546

Query: 74  GPRENKLRLFLKRSSEPLLNLQNAAQQP 101
             RE + R   +R +E  +  +   Q+P
Sbjct: 547 EMREERYRQRAERDTEEQIYSELNMQRP 574


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 299 ASKKFGDRRSPTPKTREPRSKSD 321
           +SKK   RR PTPK+  P++  D
Sbjct: 512 SSKKTRKRRKPTPKSFNPKATPD 534


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,704
Number of Sequences: 5004
Number of extensions: 74137
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 7
length of query: 537
length of database: 2,362,478
effective HSP length: 76
effective length of query: 461
effective length of database: 1,982,174
effective search space: 913782214
effective search space used: 913782214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)