GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005281-TA|BGIBMGA005281-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (537 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 65  PSP-QRKKEPGPRENKLRLFLKRSSEPLLNLQNAAQQPSAQQHQTLI----IEEFEPDV 118
           P P  ++K+   ++ K +  L  ++E  + L+NA   P A  +   +    I E +PDV
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPTKSILEKKPDV 120


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 65  PSP-QRKKEPGPRENKLRLFLKRSSEPLLNLQNAAQQPSAQQHQTLI 110
           P P  ++K+   ++ K +  L  ++E  + L+NA   P A  +   +
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAV 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,082
Number of Sequences: 429
Number of extensions: 5160
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 537
length of database: 140,377
effective HSP length: 61
effective length of query: 476
effective length of database: 114,208
effective search space: 54363008
effective search space used: 54363008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)