GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005279-TA|BGIBMGA005279-PA|IPR008997|Ricin B-related
lectin, IPR001173|Glycosyl transferase, family 2, IPR000772|Ricin B
lectin
         (665 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   4.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   6.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   6.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   6.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   6.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   8.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 450 RSPYKWRTGVNVLKKNSVRLAEVWLDD 476
           R  +K RTGV  L   S  +  +W+ D
Sbjct: 71  RLAFKKRTGVETLSVGSEFIKNIWVPD 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 450 RSPYKWRTGVNVLKKNSVRLAEVWLDD 476
           R  +K RTGV  L   S  +  +W+ D
Sbjct: 71  RLAFKKRTGVETLSVGSEFIKNIWVPD 97


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 450 RSPYKWRTGVNVLKKNSVRLAEVWLDD 476
           R  +K RTGV  L   S  +  +W+ D
Sbjct: 10  RLAFKKRTGVETLSVGSEFIKNIWVPD 36


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 609 PNTKLLKHGSSEKCMAISRNKDKITMETCKESEDRQKWTMENFNAER 655
           P+ + L    SEK +A    + +  M+  ++ + +Q+ T    NA++
Sbjct: 393 PDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQ 439


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 363 WNLQFNWHPVPSKERAKHQN 382
           WN   NW P+ +K   ++++
Sbjct: 103 WNEDLNWQPIATKYLRRYED 122


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 514 LKNIYPELFIPGESVAHGEI 533
           +KNI+P LF+    + HG++
Sbjct: 4   MKNIFPVLFVIINVLLHGQV 23


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 363 WNLQFNWHPVPSKERAKHQN 382
           WN   NW P+ +K   ++++
Sbjct: 118 WNEDLNWQPIATKYLRRYED 137


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 196 RKLPDPRDEWCKQP 209
           R+ PDP DE  K+P
Sbjct: 181 RRTPDPHDETAKKP 194


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 459 VNVLKKNSVRLAEVWLDDYAKYYYQRVGNDKGDYGDV 495
           +NV +KN +  + VWL      Y  ++  D+ DYG +
Sbjct: 64  INVNEKNQIMKSNVWLRFIWTDY--QLQWDEADYGGI 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,725
Number of Sequences: 429
Number of extensions: 10102
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 9
length of query: 665
length of database: 140,377
effective HSP length: 62
effective length of query: 603
effective length of database: 113,779
effective search space: 68608737
effective search space used: 68608737
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)