Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005276-TA|BGIBMGA005276-PA|undefined
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 29 0.60
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 29 0.60
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 29 0.60
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 1.1
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 4.3
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 4.3
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 4.3
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 26 5.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 7.4
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 129 WCDHCSRFTPTTQRGRLLRLPPILAIN 155
+C C F P T+R + RLP IL I+
Sbjct: 712 YCPGCKAFRPATKRLEIWRLPKILVIH 738
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 129 WCDHCSRFTPTTQR--GRLLRLPPILAINC 156
WC +C + PT Q+ L L P+ A++C
Sbjct: 59 WCGYCKKLVPTYQKLASNLHSLLPVTAVDC 88
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 127 PAWCDHCSRFTPTTQRGRLLRLPPILAINCGGVTVREKAYWAK--GVQKEMIINVMNDIV 184
P WC++C P R + LP L IN WA+ + K++ + +ND +
Sbjct: 690 PGWCEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHLRRVNDTM 749
Query: 185 -CVETR 189
CV +
Sbjct: 750 QCVSQK 755
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 221 DVIINDKIETNSAESSPINRPDTS---RHKKKYVTTHLEEEYSLSAAVVCVEDNPK--NL 275
D I+N E S E P+ D+S + + +T++ Y+L A + + +
Sbjct: 674 DWILNHPDE--SFEEPPLEGSDSSIKNENMGSWESTNVPVNYNLKAIISHKGSSAHAGHY 731
Query: 276 VAYIHTVRDGETQWFMYND 294
VA+I DG+ QW ++ND
Sbjct: 732 VAFIRKEIDGKQQWVLFND 750
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 217 QSDGDVIIN-DKIETNSAESSPINRPDTSRHKKKYVTTHLEEEYSLSAAV 265
Q+D V N ET+S + + +P T+R +K YV ++ YS+ A+
Sbjct: 85 QNDSHVNANKSSSETSSEKPRSVKKP-TTRKRKVYVPSYRSGAYSILCAL 133
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 219 DGDVIIN-DKIETNSAESSPINRPDTSRHKKKYVTTHLEEEYSLSAAVVCVEDNPKNLVA 277
DG + N D+ T+SA S P NR SR++ + EE+ L NP L+
Sbjct: 433 DGVAVSNMDETGTSSAGSKPFNR--KSRNRSFTNPVGMTEEHFLREYAQHSVANPSLLIH 490
Query: 278 YIH 280
IH
Sbjct: 491 QIH 493
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 210 LQLLIRLQSDGDVIINDKIETNSAESSPINRPDTSRHKK 248
L L D D +I+DKIE N PI++P S +K
Sbjct: 101 LHQLSNTPRDKDAVIHDKIEEN---KRPISQPQVSASEK 136
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 209 PLQLLI-RLQSDGDVIINDKIETNSAESSPINRPDTSRHKKKYVTTHLEEEYSLSAAVVC 267
P++L+I + ++ I + P++ P R HL ++YS S + V
Sbjct: 113 PIELVISKYNPSRQFLLRVHIMWTTGGDLPLSNPVLQRDFNVKTFIHLHKKYSNSGSAVV 172
Query: 268 VEDNPKNLVAYIHTV 282
++ N K +V ++TV
Sbjct: 173 LK-NSKKVVPRLNTV 186
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 244 SRHKKKYVTTHLEEEYSLSAAVVCVEDNPKN 274
S H KK +T + E+SL ++ + N KN
Sbjct: 2 SLHSKKSTSTVKDNEHSLDLSIKSIPSNEKN 32
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,987
Number of Sequences: 5004
Number of extensions: 41290
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 10
length of query: 296
length of database: 2,362,478
effective HSP length: 72
effective length of query: 224
effective length of database: 2,002,190
effective search space: 448490560
effective search space used: 448490560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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