GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005276-TA|BGIBMGA005276-PA|undefined
         (296 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC094885-1|AAH94885.1| 1202|Homo sapiens USP52 protein protein.        62   2e-09
AB014610-1|BAA31685.2| 1206|Homo sapiens KIAA0710 protein protein.     62   2e-09
BC024043-1|AAH24043.1| 1198|Homo sapiens ubiquitin specific pept...    56   1e-07
AB107585-1|BAD02263.1| 1198|Homo sapiens PABP1-DEPENDENT POLY(A)...    56   1e-07

>BC094885-1|AAH94885.1| 1202|Homo sapiens USP52 protein protein.
          Length = 1202

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 60  ETEISQLFAIGRHQLNRCLKCNKEEGRESVVLACALQYPPTXXXXXXXXXXXFVELVXXX 119
           ++ I QLF+      + C +C  E  R S  L   L YP             F +++   
Sbjct: 650 DSVIGQLFSCEMENCSLC-RCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRS 708

Query: 120 XXXXXXTPAWCDHCSRFTPTTQRGRLLRLPPILAINCGGVTVREKAYW 167
                 T AWCD C ++ PT Q   +  LP IL INC   + +E  +W
Sbjct: 709 ICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFW 756


>AB014610-1|BAA31685.2| 1206|Homo sapiens KIAA0710 protein protein.
          Length = 1206

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 60  ETEISQLFAIGRHQLNRCLKCNKEEGRESVVLACALQYPPTXXXXXXXXXXXFVELVXXX 119
           ++ I QLF+      + C +C  E  R S  L   L YP             F +++   
Sbjct: 654 DSVIGQLFSCEMENCSLC-RCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRS 712

Query: 120 XXXXXXTPAWCDHCSRFTPTTQRGRLLRLPPILAINCGGVTVREKAYW 167
                 T AWCD C ++ PT Q   +  LP IL INC   + +E  +W
Sbjct: 713 ICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFW 760


>BC024043-1|AAH24043.1| 1198|Homo sapiens ubiquitin specific
           peptidase 52 protein.
          Length = 1198

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 60  ETEISQLFAIGRHQLNRCLKCNKEEGRESVVLACALQYPPTXXXXXXXXXXXFVELVXXX 119
           ++ I QLF+      + C +C  E  R S  L   L YP             F +++   
Sbjct: 650 DSVIGQLFSCEMENCSLC-RCGSETVRASSTLLFTLSYPDDKTGKNYD----FAQVLKRS 704

Query: 120 XXXXXXTPAWCDHCSRFTPTTQRGRLLRLPPILAINCGGVTVREKAYW 167
                 T AWCD C ++ PT Q   +  LP IL INC   + +E  +W
Sbjct: 705 ICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFW 752


>AB107585-1|BAD02263.1| 1198|Homo sapiens PABP1-DEPENDENT
           POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2 protein.
          Length = 1198

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 60  ETEISQLFAIGRHQLNRCLKCNKEEGRESVVLACALQYPPTXXXXXXXXXXXFVELVXXX 119
           ++ I QLF+      + C +C  E  R S  L   L YP             F +++   
Sbjct: 650 DSVIGQLFSCEMENCSLC-RCGSETVRASSTLLFTLSYPDDKTGKNYD----FAQVLKRS 704

Query: 120 XXXXXXTPAWCDHCSRFTPTTQRGRLLRLPPILAINCGGVTVREKAYW 167
                 T AWCD C ++ PT Q   +  LP IL INC   + +E  +W
Sbjct: 705 ICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFW 752


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,310,078
Number of Sequences: 224733
Number of extensions: 1347973
Number of successful extensions: 2317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 4
length of query: 296
length of database: 73,234,838
effective HSP length: 89
effective length of query: 207
effective length of database: 53,233,601
effective search space: 11019355407
effective search space used: 11019355407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)