GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005275-TA|BGIBMGA005275-PA|IPR011046|WD40-like
         (616 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.79 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.79 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   5.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 194 HFLPAFSGRAVAASGDGHVS----LLHVNAPEERQSIFKVETHSSQCNVM 239
           HFL +F+G  V   G GH S    L H+        + +VE +    N+M
Sbjct: 282 HFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIM 331


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 448 KEFCLSCELGFLFRMLDTSGGTPCQATNFLRAFRTVPEAAALGL 491
           +E C  C LG +    DT G        F  AF  +   + + L
Sbjct: 268 EELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLYSVSVVSL 311


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 564 CQYTELEFLGPTEFDCQEDGELWPGRDEGENDQLSHWRRRIITVVGLS 611
           C  T LEF G   F     GE+    +E EN+  S ++     +V  S
Sbjct: 318 CIATLLEFAGVHYFTKVGSGEIPLEEEEWENENESDYQDAFCNIVSCS 365


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 319 EFFRKVYRKPKPVDPEVLKSMKMQGP 344
           E F K  +K   ++ E+L   K+QGP
Sbjct: 276 EAFVKTGKKISELEKEMLNGQKLQGP 301


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,886
Number of Sequences: 429
Number of extensions: 9272
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 616
length of database: 140,377
effective HSP length: 62
effective length of query: 554
effective length of database: 113,779
effective search space: 63033566
effective search space used: 63033566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)