GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005274-TA|BGIBMGA005274-PA|IPR011004|Trimeric LpxA-like,
IPR001451|Bacterial transferase hexapeptide repeat
         (181 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.    270   2e-72
AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens ...   270   2e-72
D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.                   37   0.035
CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.                37   0.035
BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.           37   0.035

>BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.
          Length = 182

 Score =  270 bits (661), Expect = 2e-72
 Identities = 125/180 (69%), Positives = 144/180 (80%)

Query: 1   MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 60
           MEL +  YNKSEY+ETASGNKVSRQ+VLCGSQNIVL+GK IV +D IIRGDLANV+ GR 
Sbjct: 1   MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH 60

Query: 61  CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 120
           C++   SVIRPPFKKFSKGVAFFPL +GDHVF+ E+ VVNAA +GSYV++GKN VIGRRC
Sbjct: 61  CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC 120

Query: 121 VLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTT 180
           VLKDCC I DN+VLP ET+VP F  +SG P      LPE   +LM + TKSYYQ FLP T
Sbjct: 121 VLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLT 180


>AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
           Mus musculus dynactin subunit p25 (p25) mRNA. ).
          Length = 182

 Score =  270 bits (661), Expect = 2e-72
 Identities = 125/180 (69%), Positives = 144/180 (80%)

Query: 1   MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 60
           MEL +  YNKSEY+ETASGNKVSRQ+VLCGSQNIVL+GK IV +D IIRGDLANV+ GR 
Sbjct: 1   MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH 60

Query: 61  CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 120
           C++   SVIRPPFKKFSKGVAFFPL +GDHVF+ E+ VVNAA +GSYV++GKN VIGRRC
Sbjct: 61  CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC 120

Query: 121 VLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTT 180
           VLKDCC I DN+VLP ET+VP F  +SG P      LPE   +LM + TKSYYQ FLP T
Sbjct: 121 VLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLT 180


>D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.035
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 103 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 140
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


>CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.035
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 103 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 140
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


>BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.035
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 103 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 140
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,223,068
Number of Sequences: 224733
Number of extensions: 1031228
Number of successful extensions: 1529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 8
length of query: 181
length of database: 73,234,838
effective HSP length: 85
effective length of query: 96
effective length of database: 54,132,533
effective search space: 5196723168
effective search space used: 5196723168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)