GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005273-TA|BGIBMGA005273-PA|IPR002347|Glucose/ribitol
dehydrogenase
         (233 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    64   8e-13

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 64.5 bits (150), Expect = 8e-13
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 11/233 (4%)

Query: 4   WVKKVALITDCGDEYGMHIAEKLKKCGMTVIGIVKNDKETNILEEQIIDRQG-IVIFKCC 62
           W+ +VAL+T      G  + E L   GM VIGI     +   L E++  + G +V  +C 
Sbjct: 5   WIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCD 64

Query: 63  NINIDKFNEIFEKINHTYKGIDVIINNSYCNINTKVNDGKLTEXXXXXXXXXXXXVAATR 122
             N +   ++ E +      ID++INN+  NI+  + + ++ +                +
Sbjct: 65  LSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQ 124

Query: 123 LAARSMFERK-SRGIILFIDKFKHSN---KKETKGVFITTKAAIDAVNEILRVELKHLNV 178
              + M ++  + GII+ I+     N       +  ++ +K A+  + + LR EL     
Sbjct: 125 EVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCES 184

Query: 179 NIKVTNI---LSQANYDRQNIATKE---VDMEDVAAMVVKVLEAPENLHIHEI 225
           NIKV +I   L + +   Q +       +  +DV+  V+  L+ P+N+ I E+
Sbjct: 185 NIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFALQTPDNVLIKEL 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,515
Number of Sequences: 429
Number of extensions: 2142
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 233
length of database: 140,377
effective HSP length: 56
effective length of query: 177
effective length of database: 116,353
effective search space: 20594481
effective search space used: 20594481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)