GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005272-TA|BGIBMGA005272-PA|IPR013099|Ion transport 2
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    29   1.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.3  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   5.7  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.7  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   7.6  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   10.0 
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   10.0 

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 276 LAYICVGAAI-FSAWENWSFLDAAYFCFIALATIGFGDFVPTSLLTAKHSTENSKSEYIQ 334
           LA I V   + F+  E W  +    + F+    IG   ++P SL+ ++ S   S   + +
Sbjct: 477 LASIIVSLGLGFAFTEGWHDIQIRSYGFVVSMVIGAALYIPLSLIESRSSFTISMQAFFE 536

Query: 335 MIA 337
           ++A
Sbjct: 537 IVA 539


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 267 PAGIVLFLLLAYICVGAAIFSAWENWSFLD 296
           P   +LF+L+++ C+G  + +A++N  ++D
Sbjct: 346 PLSSLLFVLISFTCIGLYVRTAFQNPGYVD 375


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 334 QMIACCAYLVFGLILIAMSFSLLQDEVVSRCSQLANT 370
           Q++   AY+   L +++ SF LL    +SR + +ANT
Sbjct: 402 QLLGWSAYVGLLLAILSSSFPLLVASKISRLTSIANT 438


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)

Query: 263 HCHIPAGIVLFLLLAYICVGAAIFSAWENWSFLDAAYFCFIALATIGFG-DFVPTSLLTA 321
           H HI   ++L LL     VGAA ++          AY   +    IGF   F P + LT 
Sbjct: 152 HTHIVVRVLLLLLSICFFVGAAFYT----------AYTTNVTHRGIGFSLIFSPFAALTR 201

Query: 322 KHSTE--NSKSEYIQMIACCAYLVFGLILIAMSFSLLQDEVVSRCSQLANTL 371
            +     NS   +I     CA  VF  +L+++ + + Q   ++ C+ ++ ++
Sbjct: 202 LYLARFLNSPQYFIPYGTLCAN-VFATLLLSIMYMIPQ---ITHCTPVSRSV 249


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)

Query: 263 HCHIPAGIVLFLLLAYICVGAAIFSAWENWSFLDAAYFCFIALATIGFG-DFVPTSLLTA 321
           H HI   ++L LL     VGAA ++          AY   +    IGF   F P + LT 
Sbjct: 152 HTHIVVRVLLLLLSICFFVGAAFYT----------AYTTNVTHRGIGFSLIFSPFAALTR 201

Query: 322 KHSTE--NSKSEYIQMIACCAYLVFGLILIAMSFSLLQDEVVSRCSQLANTL 371
            +     NS   +I     CA  VF  +L+++ + + Q   ++ C+ ++ ++
Sbjct: 202 LYLARFLNSPQYFIPYGTLCAN-VFATLLLSIMYMIPQ---ITHCTPVSRSV 249


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 141 VDEPHGSAALQTQTLDRKKVISMKCLATVH--SPVRGRAR 178
           +++ H S   Q Q  DR+K+I M+  A ++   PVR   R
Sbjct: 114 IEDQHESYMRQDQQPDRRKIIDMRIHACLYFLRPVRNGVR 153


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 313 FVPTSLLTA--KHSTENSKSEYIQMIACCAYLVFGLILIA 350
           FV  +LLT   + S   SKSE++  +AC   LV+  I  A
Sbjct: 216 FVNRALLTLPERRSLNLSKSEFVVSLACYILLVYTEIAFA 255


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 291 NWSFLDAAYFCFIALATIGFGDFV 314
           +W F +  +FCF+ +    +G+FV
Sbjct: 366 SWHFFELLFFCFLGIFGGLYGEFV 389


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,472
Number of Sequences: 5004
Number of extensions: 54793
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 8
length of query: 376
length of database: 2,362,478
effective HSP length: 74
effective length of query: 302
effective length of database: 1,992,182
effective search space: 601638964
effective search space used: 601638964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)