GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005271-TA|BGIBMGA005271-PA|IPR007110|Immunoglobulin-like
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    29   0.42 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   3.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   3.9  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   3.9  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   9.1  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   9.1  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   9.1  

>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 33  NGNQFLKFIHFLSTEAGGISTTELRITPRVVQKGKNVTMACLYDLNDYGVYSV 85
           N    +KF+  L     G+  ++L    R+V   KN    C++DL+D    S+
Sbjct: 337 NNELRIKFLGRLLGHVCGVQISKLFSCGRIVSVSKNCADICVWDLHDTNYQSI 389


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 98  SPLESPTTRVVPVNGIKVDRLRSNE 122
           S +E+ T  V+P NG++  RLRS +
Sbjct: 479 SMIEAATNVVLPENGVEWQRLRSGD 503


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 4   NDNDEENGVTNADIITFNTPRNQPQFARYN 33
           N+ ++ NGV N ++   N   +  +F RYN
Sbjct: 121 NEEEKWNGVRNVELYQCNVCGHNQRFPRYN 150


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 87  WYKGMQEFYKYSPLESPTTRVVPVNGIKVDRLRSNETHVVLLR 129
           W  G+++  K +PLE P     P +    +R+++ ET    LR
Sbjct: 84  WRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLR 126


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 32  YNGNQFLKFIHFLS 45
           Y GNQF  FI FLS
Sbjct: 155 YEGNQFFLFIFFLS 168


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 68  NVTMACLYDLNDYGVYSVKWYKGM 91
           NV  A  Y+LN  G  + +WY G+
Sbjct: 206 NVYFAAKYNLNVSGTVAHEWYMGI 229


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 53  TTELRITPRVVQKGKNVTMACLYDLNDYGVYSVKWYKGMQEFYKYSPLESPTTRVVPVNG 112
           TTE+ +T +VV++ +      L D   YG   +   K  +   KY   +  +     +N 
Sbjct: 73  TTEIHVTSQVVRENRVQLQLNLIDTPGYG-DQINNDKCWEPIIKYIRDQHSSYLRRELNS 131

Query: 113 IKVDRLRSNETHVVLLRVMP 132
            +  RL+    H  L  + P
Sbjct: 132 HREKRLQDTRVHCCLFFIRP 151


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 937,671
Number of Sequences: 5004
Number of extensions: 39189
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 2,362,478
effective HSP length: 69
effective length of query: 117
effective length of database: 2,017,202
effective search space: 236012634
effective search space used: 236012634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)