GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005267-TA|BGIBMGA005267-PA|IPR000717|Proteasome
component region PCI
         (273 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.24 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.73 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 204 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASG 243
           Q+  HQ Q   +H Q  EQ ++Y ++  ++QA + +S  G
Sbjct: 182 QQGQHQSQAQQQHLQAHEQHMMY-QQQQQSQAASQQSQPG 220


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 198 SVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSS 257
           +V  H +    Q+Q+  R QQ  E++ L   + +K +   DE A+G  A   S  K  S+
Sbjct: 155 AVQDHHRPYQQQQQQQQRQQQRQEERRLRPDE-IKVEVGEDEFANGGAARDES--KAGST 211

Query: 258 KSKT 261
            + T
Sbjct: 212 DAST 215


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 115  LATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDAR 174
            L T +K +  S+LL+E+DI      + LI  A+Y+  +    + +   V +DV+  ++A 
Sbjct: 1321 LRTCQKAVVLSMLLDEVDISMEVPSDALI--ALYSQGLFSLSEIDNLDVSLDVSNPKNAG 1378

Query: 175  LEDAASIADVLADWCNACEAVLNS--VDQHIQ 204
             +    +   L ++ +  + ++N+  +D H +
Sbjct: 1379 -KKKIDVRAKLNEYLDKADVIVNTPIMDAHFK 1409


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 131 LDIKNVRDLEDLIIEAIYADIIHGK 155
           ++  N  + ED +   +Y +II+GK
Sbjct: 25  INAANFSNFEDRVTMYVYEEIINGK 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,185
Number of Sequences: 429
Number of extensions: 2730
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 140,377
effective HSP length: 57
effective length of query: 216
effective length of database: 115,924
effective search space: 25039584
effective search space used: 25039584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)