Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005265-TA|BGIBMGA005265-PA|IPR001878|Zinc finger,
CCHC-type
(194 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.11
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 29 0.34
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 29 0.45
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 0.45
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.0
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 27 2.4
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 4.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.2
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 25 5.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.7
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.7
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 89 DREIQGTEGKRAPV---TCYKCGVEGHLASRC 117
D EI+ GK PV TCYKCG H C
Sbjct: 1788 DTEIRAHTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 89 DREIQGTEGKRAPV---TCYKCGVEGHLASRC 117
D EI+ GK PV TCYKCG H C
Sbjct: 1788 DTEIRAHTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 85 ICLSDREIQGTEGKRAPVT--CYKCGVEGHLASRCSK 119
+C + I R P T C CG+ GH+A+RCS+
Sbjct: 106 LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 142
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKTW 121
KR P C C + H +S C W
Sbjct: 145 KRGPRVCRTCHTDTHTSSTCPLIW 168
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 90 REIQGTEGKRAPVTCYKCGVEGHLASRC 117
R+ + R CYKCG GH+A C
Sbjct: 71 RDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 28.7 bits (61), Expect = 0.59
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 104 CYKCGVEGHLASRCSK-----TWSVASNSAQSTVAPSVVKSVNVCG 144
CY CG GH A C+K + + A P K+ CG
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACG 64
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 97 GKRAPVTCYKCGVEGHLASRCS 118
G R+ + CY CG GH A C+
Sbjct: 111 GHRSNMNCYACGSYGHQARDCT 132
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 103 TCYKCGVEGHLASRC 117
TCY CG GHL C
Sbjct: 59 TCYACGTAGHLVRDC 73
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 104 CYKCGVEGHLASRCS 118
CYKC GH+A C+
Sbjct: 159 CYKCNQPGHIAVNCT 173
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.45
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 152 ITQFGEQFSFCFDSGADCSLIKGS-VSRKLVGTLQHAIATLCNM 194
I +F+F F S +C L GS + RK GT+Q L +M
Sbjct: 8 IRNVSNEFNFSFQSFKECVLSHGSNLRRKTSGTIQRQFMELLSM 51
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 7 RALSPTSEVGSVQAQNVNGQITATDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPK 66
R L + + + NVN + W ++ Q+ + PP + DKNI LP+
Sbjct: 121 RLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSPVTPP-INDKNILLPE 179
Query: 67 FQP 69
P
Sbjct: 180 QSP 182
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 107 CGVEGHLASRCSKTWSVAS-NSAQSTVAPSVVKSVNVCGMKPATGIITQFGEQFSFCFDS 165
C + G L +T++ +S N A + + S+ S ++ G+I QF F
Sbjct: 143 CQILGALCYNILETYAASSLNKASTLLDLSIPWSFPNESLQQFIGLIQQFDADVLFPVSC 202
Query: 166 GADCSLIKGSVSRKLVGTLQHAIA 189
+D S I + + V L HA++
Sbjct: 203 SSDISNIYIKIKGECVVKLLHAVS 226
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 115 SRCSKTWSVASNSAQSTVAPSVVKSVN 141
+R TW +A+ S S +AP++ +++
Sbjct: 350 TRAKSTWKIANKSVYSNLAPTLKNTIH 376
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 106 KCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSVNVCGMKPATGIITQFGEQFSF 161
+C + H+ C W + S S+VA + K G ++ QF F
Sbjct: 361 ECAINFHIDCSCFDDWRLFSLKESSSVAVPIPKIKKESGRSMFQSLLFQFNHCIPF 416
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 34 RALFEAQQTSMKLLVEA----LTKPPNLEDKNITLPKFQPDDANTDARAW 79
R ++ +TS +++++A + P+ N P+ + DDA +DAR+W
Sbjct: 238 RPAYDGYETSRQIVMDAEHALSSWVPSQPAVNFVKPQIE-DDAQSDARSW 286
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 104 CYKCGVEGHLASRC 117
CY+CG +GH C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 117 CSKTWSVASNSAQSTVAPS 135
C TW+ NS Q T+A S
Sbjct: 536 CPPTWNTGPNSLQQTIANS 554
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.127 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,226
Number of Sequences: 5004
Number of extensions: 30896
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 19
length of query: 194
length of database: 2,362,478
effective HSP length: 69
effective length of query: 125
effective length of database: 2,017,202
effective search space: 252150250
effective search space used: 252150250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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