Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005265-TA|BGIBMGA005265-PA|IPR001878|Zinc finger,
CCHC-type
(194 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 39 0.013
U79569-1|AAD00321.1| 269|Homo sapiens no arches protein. 38 0.022
EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and polyadenyl... 38 0.022
CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein. 38 0.022
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 38 0.022
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 35 0.21
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 35 0.21
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 35 0.21
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 35 0.21
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 35 0.21
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 35 0.21
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 35 0.21
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 35 0.21
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 35 0.21
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 35 0.21
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 35 0.21
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 34 0.36
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 32 1.1
AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein pr... 32 1.5
AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens ... 32 1.5
AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein. 32 1.5
AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein. 32 1.5
D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein. 31 3.4
BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domai... 31 3.4
AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domai... 31 3.4
BC107584-1|AAI07585.1| 239|Homo sapiens ZCCHC3 protein protein. 29 7.9
BC069238-1|AAH69238.1| 403|Homo sapiens zinc finger, CCHC domai... 29 7.9
AL034548-4|CAB81631.1| 404|Homo sapiens zinc finger, CCHC domai... 29 7.9
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 38.7 bits (86), Expect = 0.013
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 69 PDDANTDARAWLATADICLSDREIQGTEGKRA--PVTCYKCGVEGHLASRCSK 119
P A+ + S G G R VTCYKCG +GH A+RC+K
Sbjct: 182 PQQTQPPAKRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 234
>U79569-1|AAD00321.1| 269|Homo sapiens no arches protein.
Length = 269
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 88 SDREIQGTEGKRA--PVTCYKCGVEGHLASRCSK 119
S G G R VTCYKCG +GH A+RC+K
Sbjct: 227 SQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 260
>EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 269
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 88 SDREIQGTEGKRA--PVTCYKCGVEGHLASRCSK 119
S G G R VTCYKCG +GH A+RC+K
Sbjct: 227 SQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 260
>CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein.
Length = 269
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 88 SDREIQGTEGKRA--PVTCYKCGVEGHLASRCSK 119
S G G R VTCYKCG +GH A+RC+K
Sbjct: 227 SQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 260
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 88 SDREIQGTEGKRA--PVTCYKCGVEGHLASRCSK 119
S G G R VTCYKCG +GH A+RC+K
Sbjct: 202 SQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 235
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 119 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 156
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 152 KTSEVNCYRCGESGHLARECT 172
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 119 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 156
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 152 KTSEVNCYRCGESGHLARECT 172
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 114 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 151
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 147 KTSEVNCYRCGESGHLARECT 167
Score = 29.5 bits (63), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 101 PVTCYKCGVEGHLASRC 117
P CY+CG GHLA C
Sbjct: 44 PDICYRCGESGHLAKDC 60
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 113 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 150
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 146 KTSEVNCYRCGESGHLARECT 166
Score = 29.5 bits (63), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 101 PVTCYKCGVEGHLASRC 117
P CY+CG GHLA C
Sbjct: 44 PDICYRCGESGHLAKDC 60
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 120 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 157
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 153 KTSEVNCYRCGESGHLARECT 173
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 120 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 157
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 153 KTSEVNCYRCGESGHLARECT 173
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 119 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 156
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 152 KTSEVNCYRCGESGHLARECT 172
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 112 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 149
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 145 KTSEVNCYRCGESGHLARECT 165
Score = 29.5 bits (63), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 101 PVTCYKCGVEGHLASRC 117
P CY+CG GHLA C
Sbjct: 44 PDICYRCGESGHLAKDC 60
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 112 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 149
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 145 KTSEVNCYRCGESGHLARECT 165
Score = 29.5 bits (63), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 101 PVTCYKCGVEGHLASRC 117
P CY+CG GHLA C
Sbjct: 44 PDICYRCGESGHLAKDC 60
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 119 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 156
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 152 KTSEVNCYRCGESGHLARECT 172
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 88 SDREIQGTEGKRAPVTCYKCGVEGHLASRC 117
SDR Q P CY+CG GHLA C
Sbjct: 39 SDRGFQFVSSS-LPDICYRCGESGHLAKDC 67
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSV 123
C S E + V CY+CG GH+A CSKT V
Sbjct: 109 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEV 146
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 142 KTSEVNCYRCGESGHLARECT 162
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 33.9 bits (74), Expect = 0.36
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 102 VTCYKCGVEGHLASRCSKTWSV 123
V CY+CG GH+A CSKT V
Sbjct: 12 VKCYRCGETGHVAINCSKTSEV 33
Score = 32.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 KRAPVTCYKCGVEGHLASRCS 118
K + V CY+CG GHLA C+
Sbjct: 29 KTSEVNCYRCGESGHLARECT 49
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 86 CLSDREIQGTEGKRAPVTCYKCGVEGHLASRCSK 119
C S ++ + A V CY+CG GH+A CSK
Sbjct: 112 CYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
>AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein
protein.
Length = 899
Score = 31.9 bits (69), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKT 120
K V+CY CGV GH A C ++
Sbjct: 848 KNGNVSCYNCGVSGHYAQDCKQS 870
>AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens
cDNA FLJ20281 fis, clone HEP03769. ).
Length = 298
Score = 31.9 bits (69), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKT 120
K V+CY CGV GH A C ++
Sbjct: 247 KNGNVSCYNCGVSGHYAQDCKQS 269
>AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein.
Length = 622
Score = 31.9 bits (69), Expect = 1.5
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 90 REIQGTEGKRAPVTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSVNVCGMKPAT 149
R+ QG E R P C +C H S C + A N + P ++ V G +
Sbjct: 528 RDRQGIENSRRPGLCPRCRRGNHWVSECYFKINSAGNPQRMPNEPGPIRRSGVYGQQQKN 587
Query: 150 GI 151
G+
Sbjct: 588 GM 589
>AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein.
Length = 855
Score = 31.9 bits (69), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKT 120
K V+CY CGV GH A C ++
Sbjct: 804 KNGNVSCYNCGVSGHYAQDCKQS 826
>D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein.
Length = 1516
Score = 30.7 bits (66), Expect = 3.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 87 LSDREIQGTEGKRAP--VTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSVNVCG 144
L R++ T R P + C+ CG GH+ C + +A S A +V+ N+
Sbjct: 1212 LDPRDLHDTRDFRDPRDLRCFICGDAGHVRRECPEV-KLARQRNSSVAAAQLVR--NLVN 1268
Query: 145 MKPATGIITQFGEQFSFCFDSGADCS 170
+ G Q G+Q S ++CS
Sbjct: 1269 AQQVAGSAQQQGDQ-SIRTRQSSECS 1293
>BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1645
Score = 30.7 bits (66), Expect = 3.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 87 LSDREIQGTEGKRAP--VTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSVNVCG 144
L R++ T R P + C+ CG GH+ C + +A S A +V+ N+
Sbjct: 1341 LDPRDLHDTRDFRDPRDLRCFICGDAGHVRRECPEV-KLARQRNSSVAAAQLVR--NLVN 1397
Query: 145 MKPATGIITQFGEQFSFCFDSGADCS 170
+ G Q G+Q S ++CS
Sbjct: 1398 AQQVAGSAQQQGDQ-SIRTRQSSECS 1422
>AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1644
Score = 30.7 bits (66), Expect = 3.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 87 LSDREIQGTEGKRAP--VTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSVNVCG 144
L R++ T R P + C+ CG GH+ C + +A S A +V+ N+
Sbjct: 1340 LDPRDLHDTRDFRDPRDLRCFICGDAGHVRRECPEV-KLARQRNSSVAAAQLVR--NLVN 1396
Query: 145 MKPATGIITQFGEQFSFCFDSGADCS 170
+ G Q G+Q S ++CS
Sbjct: 1397 AQQVAGSAQQQGDQ-SIRTRQSSECS 1421
>BC107584-1|AAI07585.1| 239|Homo sapiens ZCCHC3 protein protein.
Length = 239
Score = 29.5 bits (63), Expect = 7.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSV--NVCGMK 146
K P TC+KCG H++ C++ + ++P K + N+CG +
Sbjct: 165 KGQPKTCFKCGSRTHMSGSCTQDRCFRCGE-EGHLSPYCRKGIVCNLCGKR 214
>BC069238-1|AAH69238.1| 403|Homo sapiens zinc finger, CCHC domain
containing 3 protein.
Length = 403
Score = 29.5 bits (63), Expect = 7.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSV--NVCGMK 146
K P TC+KCG H++ C++ + ++P K + N+CG +
Sbjct: 329 KGQPKTCFKCGSRTHMSGSCTQDRCFRCGE-EGHLSPYCRKGIVCNLCGKR 378
>AL034548-4|CAB81631.1| 404|Homo sapiens zinc finger, CCHC domain
containing 3 protein.
Length = 404
Score = 29.5 bits (63), Expect = 7.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 98 KRAPVTCYKCGVEGHLASRCSKTWSVASNSAQSTVAPSVVKSV--NVCGMK 146
K P TC+KCG H++ C++ + ++P K + N+CG +
Sbjct: 330 KGQPKTCFKCGSRTHMSGSCTQDRCFRCGE-EGHLSPYCRKGIVCNLCGKR 379
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.316 0.127 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,340,719
Number of Sequences: 224733
Number of extensions: 1092895
Number of successful extensions: 2164
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2061
Number of HSP's gapped (non-prelim): 94
length of query: 194
length of database: 73,234,838
effective HSP length: 86
effective length of query: 108
effective length of database: 53,907,800
effective search space: 5822042400
effective search space used: 5822042400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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