GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005264-TA|BGIBMGA005264-PA|undefined
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   3.7  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 32 RDVLGEGAQTLKSTALWRLAAR 53
          R VLG+  Q +   A+ RLA R
Sbjct: 20 RKVLGDNIQGITKPAIRRLARR 41


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 78  RLGGLSGISAIPPTLPTK 95
           R+ G    +A PP LPT+
Sbjct: 443 RIHGSPATTAAPPQLPTE 460


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,410
Number of Sequences: 429
Number of extensions: 854
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)