GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005263-TA|BGIBMGA005263-PA|IPR000073|Alpha/beta
hydrolase fold-1, IPR008262|Lipase, active site
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    40   5e-04
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    37   0.003
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    31   0.13 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.31 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.53 
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    28   1.2  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   2.2  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   2.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.8  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.7  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   8.7  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 67  EKVQLMGHSLGGALSFMYAASFPDDVDKIICID-IASP 103
           EK+ L+GHS+GG LS +YA  +P+ V+K++ +  +A P
Sbjct: 172 EKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSPVAIP 209


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 59  RIVKHFKWEKVQLMGHSLGGALSFMYAASFPDDVDKIICID 99
           + +K  K +K  ++GHS+G   + + A  +PD V+K++ +D
Sbjct: 79  QFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVD 119


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 28  LCIDLPGHGHSSHYPKG--MIYYVFWDGIVLIRRIVKHFKW-EKVQLMGHSLGGAL-SFM 83
           L +DL  HG ++  P+    +  +  D    +  + + F+  EK+ L+GHSLGGA+ ++ 
Sbjct: 103 LALDLRAHGETTLEPESDMSLETLSKDFTHAVSYVQRMFELDEKIILVGHSLGGAICAYC 162

Query: 84  YAASFPDDVDKIICIDIASPAVREPSNMVKT 114
                  +   ++ ID+      E    +KT
Sbjct: 163 AFQKTIPNTSGLVVIDVVEGTAMEALGFMKT 193


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 8   QDNAGTWDNLIPLLPVNTSVLCIDLPGHGHSSHYPKGMIYYVFWDGIVLIRRIVKHFKWE 67
           +D  G  +++ P L  +T V   D PG G S +        +  D  +L   + +     
Sbjct: 291 KDFEGYENDVKPYLSPDTRVCVWDRPGMGWSDNIGSPSSVGIVMD--LLTEALAQADVSG 348

Query: 68  KVQLMGHSLGGALSFMYAASFPDDVDKIICIDIAS 102
              L+ H +GG  S ++AA    +V  I+ +D  S
Sbjct: 349 PYVLVAHGIGGVYSNVFAARHLSEVKGIVFVDAGS 383


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 137 EYEEMIDIVCDAYKGSVSKRNCRVLMRRGMMPTP 170
           E + + D+   ++ G +SK  C VL R+ ++P P
Sbjct: 125 EVKNLKDLCSPSHSGRISKSLCPVLRRKSLLPKP 158


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 183 DPRLKVAGLAMMSIETALEFAGKVKCKVLNLRALPGQGWERLDYYMKVVEKLRETTDVQY 242
           +P+L   G  ++   T   F+ ++   V+ LR    + WERL+     +EK++E  + + 
Sbjct: 71  EPKLLKGG-CIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQENNEAEI 129

Query: 243 VEVQGTHHVQLESPENIVELIEEFLE 268
           +++      +   P+ +VEL  E +E
Sbjct: 130 MQICLEEARESFDPKIVVELPSESIE 155


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 10  NAGTWDNLIPLLPV-----NTSVLCIDLPGHGHSSHYPKGMIYYVFWDGIVLIRRIVKHF 64
           NAG   + +P+  V     N +V  I   G+G S+  P      +  D    +  +++H 
Sbjct: 98  NAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTGSPSEAGLKI--DSQTALEYLMEHP 155

Query: 65  KWEKVQLM--GHSLGGALSFMYAASFPDDVDKII 96
              K +++  G S+GGA++    A   D +  +I
Sbjct: 156 ICSKTKIVVYGQSIGGAVAIALTAKNQDRISALI 189


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1   MIAIHGWQDNAGTWDNLIPLLPV-NTSVLCIDLPGHGHSSHY-PKGMIYYVFWDGIV--L 56
           ++ IHG+ ++   +      L   N  V   D  G GHS    PK       W  +   L
Sbjct: 20  VVFIHGFGEHVNAYPEFFEALNERNIEVYTFDQRGFGHSRKGGPKKQGCTGGWSLVFPDL 79

Query: 57  IRRIVKHFKWE-KVQLMGHSLGGALSFMYAAS 87
             +I++    E  + L GHS+GG L+  Y  S
Sbjct: 80  DYQILRASDTELPLFLWGHSMGGGLALRYGIS 111


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 76   LGGALSFMYAASFPDDVDKIICIDIASPAVREPSNMVKTAGWGMDKLLEYETLKEDKIPC 135
            L   +S   A++F  +V+K++  ++    VR+     K +G G D+  +   ++ D    
Sbjct: 1251 LNDGVSDKRASAFCKEVNKLVLSEV----VRQVRVTEKISGQGSDEQSKTYAIRLDLYSR 1306

Query: 136  YEYEEMIDIVCDAYKGSVSKRNCRVLMR 163
             EY++   ++ +  + + S R  ++L R
Sbjct: 1307 DEYQDEYGVLQEEIESTFSNRFLKILNR 1334


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/57 (29%), Positives = 22/57 (38%)

Query: 101 ASPAVREPSNMVKTAGWGMDKLLEYETLKEDKIPCYEYEEMIDIVCDAYKGSVSKRN 157
           A+ A +  +N  K A     K L    LK   +P      +ID VCDA        N
Sbjct: 331 AAQAAKAANNSEKQALDSACKELREAVLKNTSVPHELANSIIDYVCDALAALYKSNN 387


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 187 KVAGLAMMSIETALEFAGKVKCKVLNLRA-LPG---QGWERLDYYMKVVEKLRETTDV 240
           +++GL+ +  E  +EF+  +K   LNL A   G    G +RL    +VV++ R   DV
Sbjct: 68  RISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDV 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,283
Number of Sequences: 5004
Number of extensions: 53243
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 12
length of query: 270
length of database: 2,362,478
effective HSP length: 72
effective length of query: 198
effective length of database: 2,002,190
effective search space: 396433620
effective search space used: 396433620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)