GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005262-TA|BGIBMGA005262-PA|IPR005956|4-
hydroxyphenylpyruvate dioxygenase, IPR004360|Glyoxalase/bleomycin
resistance protein/dioxygenase
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    31   0.34 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    30   0.59 
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    28   1.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   7.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   9.7  

>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 156 FLPGYQLLEKDPISKYLPKVEINFIDHIVGNQPENEMEEAASWYERCLQFHRFWSVDDKQ 215
           F P Y   E   I +  P   ++F+D    +  E+E+E +  W + C  F   WSV   Q
Sbjct: 173 FFPQYTQAEILEICQKTPP-NLDFLDRSGDSVFEDEIELSV-WMQYC-SF--LWSVFGVQ 227

Query: 216 VCTEYSALRSVVMANWEETVKVPINE 241
              +Y + RSV+   W + ++ PI E
Sbjct: 228 CLNDYRSFRSVLDRYWPKFIQ-PIVE 252


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 239 INEPAAGKRKSQIQEYVEYHGGAGVQHIAINTEDIITAIENLRERGVEFLSIPSKYYNLI 298
           IN+P     + Q++E V+Y    GV+ I I  + ++TAI   R  G   ++IPS     I
Sbjct: 520 INDPP----RPQVRESVQYLMTGGVRVIMITGDSVVTAISIARSLG---MAIPSNDEEAI 572

Query: 299 R 299
           R
Sbjct: 573 R 573


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 247 RKSQIQEYVEYHGGAGVQHIAINTEDIITAIENLRERGVEFLSIP 291
           +KS ++  V  H   G+  +  +   IITA+ +LRE+  E +  P
Sbjct: 218 KKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKHAESIMTP 262


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 90  GDFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMATLK 137
           GD + D+ F+ E L  IL Y   Q + + KDL     +  ++  AT+K
Sbjct: 303 GDRLMDMGFE-ETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMK 349


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 91  DFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMATLKTYG 140
           +F++D  +Q+   D++   A +  A+ +  +   KD +G++ +A  K YG
Sbjct: 637 EFLRDT-YQIREADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLAD-KRYG 684


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,097
Number of Sequences: 5004
Number of extensions: 68413
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 5
length of query: 366
length of database: 2,362,478
effective HSP length: 74
effective length of query: 292
effective length of database: 1,992,182
effective search space: 581717144
effective search space used: 581717144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)