GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005262-TA|BGIBMGA005262-PA|IPR005956|4-
hydroxyphenylpyruvate dioxygenase, IPR004360|Glyoxalase/bleomycin
resistance protein/dioxygenase
         (366 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.59 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.78 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   9.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.59
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 141 SNTHTLVDRSKYTGPFLPGYQLLEKDPISKYLPKVE 176
           S+TH+ + RS   GP +   QL   D I  Y+ + E
Sbjct: 700 SSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGE 735


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 100 VENLDYILEYARKQGAKVVKDLW--EEKDQYGVVRMATLKTYGSNTHTLVDRSKYTGP 155
           +++L+ +   A+KQ  KV+ DL      DQ+   +M+   T  +NT+   D   +  P
Sbjct: 97  IKDLEDLTAEAKKQNLKVILDLVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYIWVDP 154


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 282 ERGVEFLSIPSKY 294
           ERG+ F+ IP++Y
Sbjct: 772 ERGILFMPIPNRY 784


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 164 EKDPISKYLPKVEINFIDHIVGNQP 188
           E++ + + L  + +N I HI+ N P
Sbjct: 41  EENVVEELLSPLTLNRITHILANSP 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,886
Number of Sequences: 429
Number of extensions: 4020
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 366
length of database: 140,377
effective HSP length: 59
effective length of query: 307
effective length of database: 115,066
effective search space: 35325262
effective search space used: 35325262
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)