GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005260-TA|BGIBMGA005260-PA|IPR011009|Protein
kinase-like, IPR001245|Tyrosine protein kinase, IPR000719|Protein
kinase
         (148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    27   0.11 
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.4  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 129 YALQVALGMKHLEGRGITHR 148
           YA ++A+G+  L GRGI +R
Sbjct: 90  YASEIAIGLFFLHGRGIVYR 109


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/31 (29%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 97  KLYID-SEINKLMKRDHYVAEPALHLDSTTM 126
           ++Y+D +E+NKL+     +++  +HL S+ +
Sbjct: 89  EIYLDENEVNKLITECSAISDADIHLKSSKL 119


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 73  IGKPSEGDSDYTHFSDSDP 91
           +GKP++ DS++  +S  +P
Sbjct: 535 LGKPTKEDSEWPSYSRDEP 553


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 11  LKHVGYHKHVIRLIGCCTRRAP 32
           +K VGY    + ++ C T+  P
Sbjct: 87  IKIVGYKGRALVVVSCVTKDQP 108


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 11  LKHVGYHKHVIRLIGCCTRRAP 32
           +K VGY    + ++ C T+  P
Sbjct: 87  IKIVGYKGRALVVVSCVTKDQP 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,539
Number of Sequences: 429
Number of extensions: 1069
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 140,377
effective HSP length: 52
effective length of query: 96
effective length of database: 118,069
effective search space: 11334624
effective search space used: 11334624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)